BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326799
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25320.1 | Symbols: | ACT-like superfamily protein | chr5:8... 2278 0.0
> AT5G25320.1 | Symbols: | ACT-like superfamily protein | chr5:8787403-8789530
REVERSE LENGTH=1503
Length=1503
Score = 2278 bits (1233), Expect = 0.0
Identities = 1426/1517 (94%), Gaps = 22/1517 (1%)
Strand=Plus/Plus
Query 1 ATGCAGAAAGTTTGCTGGCCTTACTTTGATCCTGATTTCGACAATCTTGGTGAACGCATA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCAGAAAGTTTGCTGGCCTTACTTTGATCCTGATTTCGACAATCTTGGTGAACGCATA 60
Query 61 TACGGTCCACCATGCAGGGTCTATATTGACAATGACAGCATT-ATAGATTGCACCGTTGT 119
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 61 TACGGTCCACCATGCAGGGTCTATATTGACAATGACAGCATTCA-AGATTGCACCGTTGT 119
Query 120 GAAGGTGAATAGTGAGAACAAACAAGGGCTTCTTCTAGAAGTGGTCCAAATCTTGACGGA 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 120 GAAGGTGAATAGTGAGAACAAACAAGGGCTTCTTCTAGAAGTGGTGCAAATCTTGACGGA 179
Query 180 CATGAATCTTATTATCACCAAGAGTTACATCTCTTCCGATGGTGGATGGTTCATGGATGT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CATGAATCTTATTATCACCAAGAGTTACATCTCTTCCGATGGTGGATGGTTCATGGATGT 239
Query 240 TTTCCATGTTAAAGACGAGTATGGCAATAAACTCACTGATAAAAGCGTCATCAACCACAT 299
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 240 TTTCCATGTTAAAGATGAGCATGGAAATAAACTCACTGATAAAAGCGTCATCAACCACAT 299
Query 300 CAAACATGCTATTGGTACGAGTAGGCGAGAATCCGATTTTATAAAGGCTAGTGAAGCGCA 359
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAAACATGCCATTGGTACGAGTAGGCGAGAATCCGATTTTATAAAGGCTAGTGAAGCG-- 357
Query 360 TAACAACCCAAACAACAATTCCTTGGAATCTCCATTAAG-TGATCACGGCGAACACACAG 418
|| ||||||||||||||| ||| ||| | ||||||||||||||||||||
Sbjct 358 ----------AATAACAATTCCTTGGAACCTCAATT-GGCTGATCACGGCGAACACACAG 406
Query 419 CGATAGAGATGACCGGGACAGACAGACCGGGCCTCTTCTCAGAGATATTCGCTGCTTTCG 478
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 407 CGATAGAGATGACCGGGACAGACCGACCGGGCCTCTTCTCAGAGATATTTGCTGCTTTCG 466
Query 479 CGGACTTACATTGCAACGTCATGGAAGCTCATGCTTGGAGCCATAACGCTCGTTTGGCTT 538
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 467 CGGACTTACATTGCAACGTCATGGAAGCTCATGCTTGGAGCCACAACGCTCGTTTGGCTT 526
Query 539 GCATTGCCTATGTTTCTGACGACAATACTCATACTCCCATTGATGACCCGAGCCGCTTGG 598
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 527 GCATTGCCTATGTCTCTGACGACAATACTCACACTCCCATTGATGACCCGAGCCGCTTGG 586
Query 599 CTTCCATTGAGGACCATCTCAGTACTGTGATACGTGCCACATCGGATCCTGCCTCCAACT 658
|||||||||||||||| || ||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 587 CTTCCATTGAGGACCACCTAAGTACTGTGATCCGTGCCACAGCGGATCCCGCCTCCAACT 646
Query 659 CTACACACGTGGGTCACAAGGAAAACGAAACGGATGGGTTTCTTGCGGGACAAGGCAAAG 718
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 647 CTACACACGTGGGTCACAAGGAAAACGAGACTGATGGGTTTCTTGCAGGACAAGGCAAAG 706
Query 719 GGTGTATGAATAGCAACGTTGAAAGACGGTTGCATCAACTAATGCTATCAGTGAGAGACT 778
||||||||||||||||| | || |||||||||||||| |||||| |||| ||||||||||
Sbjct 707 GGTGTATGAATAGCAACATGGAGAGACGGTTGCATCAGCTAATGTTATCTGTGAGAGACT 766
Query 779 TTGACGAACCGTTTTGTGAGCCTTCGTCATTGTCCTTATTGTCGTCCAAGTTGGAGTACT 838
||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||
Sbjct 767 TTGACGAACCGTTTTGTGAGCCTTCTTCGTTGTCATTATTGTCGTCCAAGTTAGAGTACT 826
Query 839 GTGATCAGAAGGAGAGGAAGACAACTATAGTTTCGATTGGGAATTGTGAAGAGAGAGGAT 898
| ||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 827 GCGATCATAAGGAGAGGAAGACAACTATAGTTTCGATTGGGAATTGCGAAGAAAGAGGAT 886
Query 899 ACTCTATTGTCACAGTGAAGTCTAAGGATCGAAGAAGACTCATGTTTGATACAATATGCA 958
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || |
Sbjct 887 ACTCTATTGTCACAGTGAAATCTAAGGATCGAAGAAGGCTCATGTTTGATACAATTTGTA 946
Query 959 CTTTGGTTGACATGCAATATGTTATCTTCCACGCCGCTCTACGGTCAGATGGAGCTGATG 1018
|||||||||| |||||||| |||||||| ||||||||||| ||||| |||||||||||||
Sbjct 947 CTTTGGTTGATATGCAATACGTTATCTTTCACGCCGCTCTCCGGTCTGATGGAGCTGATG 1006
Query 1019 CTTTTCAGGAATACTTCATAAGACACATAGATGGAAGGGCATTGAACACCGAAGGCGAGA 1078
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1007 CTTTTCAAGAATACTTCATAAGACACATAGATGGAAGGGCATTGAACACGGAAGGCGAGA 1066
Query 1079 AAGAACGGGTGATTAAATGCTTGGAGGCTGCAATAGAACGGCGGGTTTGCGAGGGCGTGA 1138
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1067 AAGAACGGGTGATTAAATGCTTGGAGGCTGCAATAGAACGCCGCGTTTGCGAGGGCGTGA 1126
Query 1139 AGTTGGAGTTATGCGCTGAGAACAGAGTAGGCTTACTCTCTGACATTACTCGTGTACTCC 1198
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1127 AGTTGGAGTTATGCGCAGAGAACAGAGTAGGCTTACTCTCTGACATCACTCGTGTACTAC 1186
Query 1199 GTGAGAACGGTTTAACCGTTGTCCGCGCAGACGTGGAGACACAAGGCCAGAAGTCGCTCA 1258
||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| ||||
Sbjct 1187 GTGAGAATGGTTTAACCGTTGTCCGTGCAGACGTGGAGACTCAAGGCCAAAAGTCTCTCA 1246
Query 1259 ATGCTTTTTACGTCAGAGATATTTCCGGCAACAAAATCGATATGGAGTTTGTGGAATCAG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1247 ATGCTTTTTACGTCAGAGATATTTCCGGCAACAAAATCGATATGGAGTTTGTGGAGTCAG 1306
Query 1319 TGAAGAAAGAGATGAGACCGATCCACCTTGAGGTCAAGAATGAAGACACAACAACAGACA 1378
||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 1307 TGAAGAAAGAGATGAGACCAATCCACCTTGAGGTCAAGAATGAAGACACAAAAATAGACA 1366
Query 1379 TAGTTGGATCGGATGA-CC--C-GCC--AGCCTCAGCCGCACCACAACCGCAACCACAAC 1432
||||||||||||||| || | ||| |||||||||| |||| |||| |||||||||||
Sbjct 1367 CAGTTGGATCGGATGAACCGACAGCCTCAGCCTCAGCCACACCGCAACGGCAACCACAAC 1426
Query 1433 CTCACCGTTTCTCGCTTGGTGACATCCTTCGTTCACAGATCGAACGCCTTTCTCTCAACT 1492
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1427 CGCACCGTTTCTCGCTTGGTGACATCCTTCGATCACAGATGGAACGCCTTTCTCTCAACT 1486
Query 1493 TCGTCCCAACCAAATGA 1509
|||||||||||||||||
Sbjct 1487 TCGTCCCAACCAAATGA 1503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74447408235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5