BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg326811

Length=336
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G25425.1 | Symbols:  | glycine-rich protein | chr5:8848549-8...   377    3e-104


> AT5G25425.1 | Symbols:  | glycine-rich protein | chr5:8848549-8848986 
FORWARD LENGTH=342
Length=342

 Score =  377 bits (204),  Expect = 3e-104
 Identities = 301/346 (87%), Gaps = 14/346 (4%)
 Strand=Plus/Plus

Query  1    ATGGCCTCCGTTGACACCAGCCATGTTTCCACCATATCCAAGCCAGAAGGTGTTATTGGC  60
            ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTTCCGTTGACACCAACCATGTTTCCACCATATCCAAGCCAGAAGGTGTTATTGGC  60

Query  61   TACGGTGAGAA-GACGTCGAAATTAGCAGTCTTTATCCGAAAAGG-CGGTGGCGGTAAGG  118
            || |||| ||| |||| | ||||||||||||||||||| |||||| | ||||||||| ||
Sbjct  61   TATGGTG-GAAAGACGCCAAAATTAGCAGTCTTTATCC-AAAAGGGCAGTGGCGGTAGGG  118

Query  119  GAGGAGGAGGACGTGGTGGCGGTAAGTTAGGAGGAGGACGTGGTGGCGGATACGATCGTC  178
            ||||||| ||||||||||||||||||  | |||||||||| |||||| ||||||| ||||
Sbjct  119  GAGGAGGCGGACGTGGTGGCGGTAAGGGAAGAGGAGGACGCGGTGGCAGATACGACCGTC  178

Query  179  TAAGGCAATCTCGCGGTGGGCTAGGCGGGTATCCGtttttttCGGGTATGTCGCACCACC  238
            ||| ||||||||||||||| |||||||||| ||| | |||||  ||||||||||||||||
Sbjct  179  TAAAGCAATCTCGCGGTGGTCTAGGCGGGTTTCCATATTTTTATGGTATGTCGCACCACC  238

Query  239  A---T---CGTTCAAGCGGTAGCCGGAATCTTGGAAGGCCAAGGTGTGGTTTCGGTTGGT  292
            |   |   || |||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct  239  ACGCTAATCGGTCAAGCAGTAGCCGGAATCTTGGAAGGTCAGGGTGTGGTTTCGGTTGGT  298

Query  293  TAGCTTTAGTATCGGCTTAGGTCG-GATT-ATTGTTGGTTTCGTAG  336
            ||| |||| || |||||| ||| | | || ||| |||||||| |||
Sbjct  299  TAGGTTTATTACCGGCTTTGGTAGTG-TTGATT-TTGGTTTCATAG  342



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15683537688


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5