BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326812
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25430.1 | Symbols: | HCO3- transporter family | chr5:88512... 2950 0.0
> AT5G25430.1 | Symbols: | HCO3- transporter family | chr5:8851251-8854259
FORWARD LENGTH=2016
Length=2016
Score = 2950 bits (1597), Expect = 0.0
Identities = 1751/1826 (96%), Gaps = 7/1826 (0%)
Strand=Plus/Plus
Query 106 GGAGCTCTAAGTGCAGTGGAAACATTAGCTTCTACTTCGATATGCGGAATCATCCATGCG 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 GGAGCTCTAAGTGCAGTGGAAACATTAGCTTCTACTTCGATATGCGGAATCATCCATGCG 255
Query 166 ATTTTTGGTGGACAACCATTGTTGATACTTGGGGTTGCAGAGCCAACCATCATTATGTAT 225
||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 256 ATTTTCGGTGGACAACCATTGTTGATAGTTGGAGTTGCAGAGCCAACCATCATTATGTAT 315
Query 226 ACTTATCTTTATAGTTTCTGCATTAGTAGACCGGATATCGGTCGAGAACTTTACCTAGCT 285
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 ACTTATCTTTACAGTTTCTGCATTAGTAGACCGGATATCGGTCGAGAACTTTACCTAGCT 375
Query 286 TGGGTTGCATGGGTTTGTGTATGGACTTCAGTTTTGCTTATCCTTCTTTCGATATTTAAC 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TGGGTTGCATGGGTTTGTGTATGGACTTCAGTTTTGCTTATCCTTCTTTCGATATTTAAC 435
Query 346 GCGGGCACAATCATCACGAGGTTTACGAGAATCGCTGGGGAACTTTTTGGCATGTTGATT 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GCGGGCACAATCATCACGAGGTTTACGAGAATCGCTGGGGAACTTTTTGGCATGTTGATT 495
Query 406 GCTGTTCTGTTTTTACAAGAAGCTATCAAGGGATTGATCAGCGAGTTTAACGCCCCCGAA 465
|||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||
Sbjct 496 GCTGTTCTGTTTTTACAAGAAGCTATAAAGGGATTGATCAGTGAGTTTCACGCCCCCGAG 555
Query 466 ATTAAAAATCAAGAAACAGGGAAATCTCATTTCCTCTTG-TTGTATGCAAATGGGTTGCT 524
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 556 ATTAAAAATCAAGAAACAGGGAAATCTCATTTCCTCTTGATT-TATGCAAATGGTTTGCT 614
Query 525 CGCGGTAATTTTCTCGTTAGGCCTTGTATTCACCGCGCTAAAGAGTAGAAGAGCAAAATC 584
||||||||||||||| |||||||| || ||||||||||||||||||| |||||||||||
Sbjct 615 TGCGGTAATTTTCTCGCTAGGCCTTCTAATCACCGCGCTAAAGAGTAGGAGAGCAAAATC 674
Query 585 TTGGAAATACGGCTTTGGATGGCTTCGGAGTTTCATTGGAGATTACGGTGTTCCTTTAAT 644
||||||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 675 TTGGAAATATGGTTTTGGGTGGCTTCGAAGTTTCATTGGAGATTACGGTGTTCCTTTAAT 734
Query 645 GGTCTTGTTATGGACGGCATTGTCTTACACAATTCCTAGTGAAGTACTTCCAAGTGTTCC 704
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 735 GGTCTTGTTATGGACGGCATTGTCTTACACAGTTCCTAGTGAAGTCCTTCCAAGTGTTCC 794
Query 705 TCGGAGACTGTTCTGTCCTCTTCCATGGGAGCCAGCTTCATTGTATCATTGGACTGTAAT 764
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 795 CCGGAGACTGTTTTGTCCTCTTCCATGGGAGCCAGCTTCATTGTATCATTGGACTGTAGT 854
Query 765 AAAGGACATGGGTAAGGTACCGGTAATGTATATATTTGCTGCGTTTATACCCGGTGTGAT 824
||||||||||| ||||||||| |||||||||| || |||||||||||||| ||||||||
Sbjct 855 CAAGGACATGGGGAAGGTACCGATAATGTATATCTTAGCTGCGTTTATACCTGGTGTGAT 914
Query 825 GATAGCAGGACTTTACTTCTTCGACCATAGTGTAGCTTCACAAATGGCACAACAGAAAGA 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GATAGCAGGACTTTACTTCTTCGACCATAGTGTAGCTTCACAAATGGCACAACAGAAAGA 974
Query 885 GTTTAATCTAAAGAATCCTTCTGCTTATCACTATGACATCTTCTTGCTTGGAATTATGAC 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 975 GTTTAATCTAAAGAATCCTTCTGCTTATCACTATGACATCTTCTTGCTTGGAATTATTAC 1034
Query 945 TTTGATATGTGGACTACTTGGACTTCCTCCTTCAAATGGTGTTCTTCCTCAGGCTCCAAT 1004
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1035 TTTGATATGTGGACTACTTGGACTTCCACCTTCAAATGGTGTTCTTCCTCAGGCTCCAAT 1094
Query 1005 GCACACAAAGAGTCTTGCAGTTCTCAATCGTCAGCTGACACGCAAGAAAATGGTGAAGAA 1064
|||||||||||||||||| |||||||||||||| || | |||||||||||||||||||||
Sbjct 1095 GCACACAAAGAGTCTTGCGGTTCTCAATCGTCAACTTATACGCAAGAAAATGGTGAAGAA 1154
Query 1065 AGCAAAGGAGTGTATGAAAATGAAAGCTAGCAAATCAGAAATATATGGAAGAATGCAATC 1124
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1155 AGCAAAGGAGTGTATGAAAATGAAAGCAAGCAAATCAGAAATATATGGGAGAATGCAATC 1214
Query 1125 AGTGTTTATAGAGATGGAGACATGCCCACCTCAGGATAATTCAGTAGCAACAGATTTAAA 1184
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1215 AGTGTTTATAGAGATGGAGACATCCCCACCTCAGGATAATTCTGTAGCAACAGATTTAAA 1274
Query 1185 AGAGTTGAAAGAAGTTGTAATGAGACCGGACCAAGGAG-CGGATACAAAAGGAAAATTCG 1243
|||||||||||||||||| |||||||| ||| |||||| || ||||||||||||||||||
Sbjct 1275 AGAGTTGAAAGAAGTTGTGATGAGACCAGACGAAGGAGGCG-ATACAAAAGGAAAATTCG 1333
Query 1244 ATCCGGATGTGCATATAGAGGCTAACTTGCCGGTTAGAGTAAACGAGCAAAGAGTGAGCA 1303
|||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1334 ATCCCGATGTTCATATAGAGGCTAATTTACCGGTTAGAGTAAACGAGCAAAGAGTGAGCA 1393
Query 1304 ATCTTTTGCAATCAGTTCTTGTTGGTTTAACACTTCTTGCAGTGCCAGTCATCAAAATGA 1363
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1394 ATCTTTTGCAATCAGTTCTTGTTGGTTTAACACTTCTTGCAGTGACAGTCATTAAAATGA 1453
Query 1364 TCCCAAGTTCAATACTTTGGGGTTACTTTGCTTATATGGCGATAGACAGTCTCCCGGGAA 1423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 TCCCAAGTTCAGTACTTTGGGGTTACTTTGCTTATATGGCGATAGACAGTCTCCCGGGAA 1513
Query 1424 ACCAATTCTGGGAGAGATTGTTGCTTCTCTTTATTCCTCCTAGCCGTCTTTTCAAAGTCT 1483
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1514 ACCAATTTTGGGAGAGATTGTTGCTTCTCTTTATTCCTCCTAGCCGGCTTTTCAAAGTCT 1573
Query 1484 TGGAAGGAGTACATGCTTCATTTGTGGAGTTAGTACCATACAGAGTGATTGTAACATTCA 1543
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1574 TGGAAGGAGTGCATGCTTCATTTGTGGAGTTGGTACCATACAGAGTGATTGTAACATTCA 1633
Query 1544 CACTTTTCCAGTTGGTTTATTTTCTCTTGTGCTATGGTATGACATGGATTCATATGGCCG 1603
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1634 CACTTTTCCAGTTGGTTTATTTTCTCTTGTGCTATGGTATGACATGGATTCCTATGGCCG 1693
Query 1604 GGATATTTTTCCCGGCGCTCTTCTTTCTACTCATAAGTATAAGAGAACACTTGCTTCCCA 1663
||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1694 GGATATTTTTCCCCGCACTCTTCTTTCTACTTATAAGTATAAGAGAACACTTGCTTCCCA 1753
Query 1664 AGTTATTCCATCCCCAACATCTTCAAGTGCTAGATGCTTCTGACTATGAAGAAATAGTAG 1723
|||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1754 AGTTATTCGATATGCAACACCTTCAAGTGTTAGATGCTTCTGACTATGAAGAAATAGTAG 1813
Query 1724 CAGCACCTATACAACAACACTCAAGTTTCGCATACCGGAAACTAGGGTCTTCTCATCATT 1783
|||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1814 CAGCACCTAT-C--CAACACTCAAGTTTCGCATATAGGAAACTAGGGTCTTCTCATCATT 1870
Query 1784 TATCAGAAGGTGAAGATGAATTCTACGACGCGGAGATATTGGATGAGCTGACTACAAGCA 1843
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1871 TATCAGAAGGTGAAGATGAATTCTACGACGCGGAGATATTGGATGAGATGACTACAAGCA 1930
Query 1844 GAGGTGAAATAAGGATCCGAACCATAAGTTTTAAAGAGGTGCATCCGGAGCCTGAAGAGA 1903
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1931 GAGGTGAAATAAGGATCCGAACCATAAGTTTTAAAGAGGTGCACCCGGAGCCTGAAGAGA 1990
Query 1904 AGCGTGTAACCTTTGAACCACATTAA 1929
||| ||||||||||||||||||||||
Sbjct 1991 AGCATGTAACCTTTGAACCACATTAA 2016
Score = 171 bits (92), Expect = 3e-41
Identities = 100/104 (96%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAGTGAAGGAGAAGGAGGTCCATTTCAGGGAATACTTCGAGATATCGAAGGTAGA 60
||| |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGAAGAGTGAAGGAGAAAGTGGTCCATTTCAGGGAATTCTTCGAGATATCGAAGGTAGA 60
Query 61 CGAAAATGTTACAAACAAGATTGGATTCGTGGCATAAAAACCGG 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAAAATGTTACAAACAAGATTGGATTCGTGGCATAAAAACCGG 104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95531637135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5