BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326853
Length=450
Score E
Sequences producing significant alignments: (Bits) Value
AT5G25980.2 | Symbols: TGG2, BGLU37 | glucoside glucohydrolase ... 361 4e-99
> AT5G25980.2 | Symbols: TGG2, BGLU37 | glucoside glucohydrolase
2 | chr5:9072727-9075690 FORWARD LENGTH=1860
Length=1860
Score = 361 bits (195), Expect = 4e-99
Identities = 226/241 (94%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 211 AAGCGTGTCAACGTGAAAGGATACTTTGCTTGGGCTCTTGGGGATAACTACGAATTCTGC 270
|||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||
Sbjct 1408 AAGCGTGTCAACGTGAAAGGATACTTTGTTTGGTCTCTTGGGGATAATTACGAATTCTGC 1467
Query 271 AACGGCTTCACCGTCAGATTCGGACTTAGTTACGTTGACTTCAATAATGTCACTGCTGAT 330
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1468 AACGGCTACACCGTCAGATTCGGACTTAGTTACGTTGATTTCAATAATGTCACTGCTGAT 1527
Query 331 AGAGACCTCAAAGCATCTGGCTTATGGTACCAGTCGTTCTTAAGAGATACCACCAAGAAC 390
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1528 AGAGACCTCAAAGCTTCTGGCTTATGGTACCAGTCGTTCTTGAGAGATACCACCAAGAAC 1587
Query 391 CAAGATCTCCTCCGCTCAAGCCT-CTCCTTCAAGAACCGTGATAGGAAGAGCCTCGCATG 449
|||||| ||||||||||||| || | |||| |||||| | ||||||||||||||| ||||
Sbjct 1588 CAAGATATCCTCCGCTCAAGTCTGC-CCTTTAAGAACGGGGATAGGAAGAGCCTCACATG 1646
Query 450 A 450
|
Sbjct 1647 A 1647
Score = 174 bits (94), Expect = 5e-43
Identities = 118/129 (91%), Gaps = 3/129 (2%)
Strand=Plus/Plus
Query 57 CAGTTATTACCACCCAAGAGGCATGCTAAACGTAATGGAGCACTTCAAAACCAAATACGG 116
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1209 CAGTTATTACCACCCAAGAGGGATGTTAAACGTAATGGAGCACTTCAAAACCAAATACGG 1268
Query 117 TGACCCTTTGATCTATGTCACCGAAAACGGAATTATCAGTACCGCCGGTGGCGACATACC 176
||||||||| |||||||||||||| |||||| || ||||||| |||||||| ||||||
Sbjct 1269 TGACCCTTTAATCTATGTCACCGAGAACGGA-TT--CAGTACCTCCGGTGGCCCCATACC 1325
Query 177 CTTTACCGA 185
||| |||||
Sbjct 1326 CTTCACCGA 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21414061074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5