BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326855
Length=1032
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26010.1 | Symbols: | Protein phosphatase 2C family protein... 1410 0.0
> AT5G26010.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:9085393-9087372 REVERSE LENGTH=1115
Length=1115
Score = 1410 bits (763), Expect = 0.0
Identities = 950/1036 (92%), Gaps = 29/1036 (3%)
Strand=Plus/Plus
Query 1 ATGGGTCATTGCTTTTCGTTGCCGTCTTCTTC-ATCGGAGATTCACGAGGATAATGAGCA 59
|||||||||||||||||||| |||||||| || |||||||||||| ||||||||||||||
Sbjct 1 ATGGGTCATTGCTTTTCGTTACCGTCTTC-TCAATCGGAGATTCATGAGGATAATGAGCA 59
Query 60 CGGTGATGGAAATGCGGTAGTGTTTAATGGATTAGAGTTCGGTTTAGATCATGACCTTCC 119
|||||||||||||| ||| ||| || ||||| |||||||||||||||||| ||||||||
Sbjct 60 CGGTGATGGAAATGTGGT-GTG-TT-ATGGAGAAGAGTTCGGTTTAGATCAAGACCTTCC 116
Query 120 GGTTCATCGACTCGGTTCGGTCTGCTCTATACAAGGAACCAAAGTGCTTAACCAAGATCA 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 117 GGTTCATCGACTCGGTTCGGTCTGCTCCATACAAGGAACCAAAGTGCTTAACCAAGATCA 176
Query 180 TGCTGTTCTTTACCTGGAATATGGAACAAGGGAAACAGAGCTATGTGGAGTGTTTGATGG 239
|||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||
Sbjct 177 TGCTGTTCTTTACCAGGGATATGGAACAAGAGATACAGAGCTATGTGGAGTGTTTGATGG 236
Query 240 GCACGGTAAAAATGGGCACATGGTGAGCAAAATGGTGAGAAATAGACTGCCATCGGTTCT 299
||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 237 ACACGGCAAAAATGGGCACATGGTGAGCAAAATGGTGAGGAATAGATTGCCATCGGTTTT 296
Query 300 GTTAGCACTAAAGGAAGAGCAAAACCAAGAATCTAATGTTTGTGAAGAAGAAGC-TAACA 358
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |
Sbjct 297 GTTAGCACTAAAGGAAGAGCTAAACCAAGAATCTAATGTTTGTGAAGAAGAAGCTTCA-A 355
Query 359 AATGGGAAAATGCTTGTTTTACTGCCTTTAGACTCATTGACAGAGAGCTTAATCTCCAAG 418
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 356 AATGGGAAAAGGCTTGTTTTACTGCCTTTAGACTCATTGATAGAGAGCTTAATCTTCAAG 415
Query 419 TCTTTGACTGCTCTTTCAGTGGCTCCACTGGTGTTGTTGCCATAACTCAGGGAGATGATC 478
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 416 TCTTTAATTGCTCTTTCAGTGGCTCCACTGGTGTGGTTGCCATAACTCAGGGAGATGATC 475
Query 479 TCGTGATAGCAAACCTCGGTGATTCAAGGGCAGTGTTGGGGACAATGACTGAAGATGGTG 538
| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 476 TTGTGATAGCGAACCTTGGTGATTCAAGGGCAGTATTGGGGACAATGACTGAAGATGGTG 535
Query 539 AGATCAAGGCAGTACAGTTAACATCAGACCTAACACCTAATGTCCCTACGAGTTCTATCG 598
|||||||||||||||||||||||||||||||||||||| |||| | | ||| |
Sbjct 536 AGATCAAGGCAGTACAGTTAACATCAGACCTAACACCTGATGT---T-C-----CTA--G 584
Query 599 TTGCAGGTGAAGCAGAGAGGATCAGGATGTGCAAAGGTCGTGTTTTCGCAATGAAAGCAG 658
| | | | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 585 T-G-A----A-GCAGAGAGGATCAGGATGTGCAAAGGTCGTGTTTTCGCAATGAAAACAG 637
Query 659 AACCGTGCAGCCAAAGGGTGTGGTTACCCAACCAAAACATACCAGGATTAGCCATGTCAA 718
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 638 AACCAAGCAGCCAAAGGGTGTGGTTACCAAACCAAAACATACCAGGATTAGCCATGTCAA 697
Query 719 GAGCTTTTGGAGATTTTAGGCTCAAAGACCACGGCGTTATTGCGGTTCCAGAGATCTCTC 778
|||||||||||||||| |||||||||||||| || |||||||||||||| || |||||||
Sbjct 698 GAGCTTTTGGAGATTTCAGGCTCAAAGACCATGGTGTTATTGCGGTTCCTGAAATCTCTC 757
Query 779 AACACCGAATAACTTC-AAACGACCGGTTCCTTGTACTCGCTACTGATGGGGTTTGGGAT 837
|||||||||| ||||| ||| |||| ||||||||||||||||||||| ||||||||||||
Sbjct 758 AACACCGAATTACTTCTAAA-GACCAGTTCCTTGTACTCGCTACTGACGGGGTTTGGGAT 816
Query 838 ATGCTAAGCAATGATGAAGTTGTATCGCTGATATGGAGTTC-GGGAAAAAAGCAAGCTGA 896
||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 817 ATGCTTAGCAATGATGAAGTTGTATCGCTTATATGGAGTTCCGGGAAAAA-GCAAGCTTC 875
Query 897 GGCCGCTAAATTGGTGGCGGAGGCAGCTGAAGCTGCATGGAAGAAAAAGCTTAAATCTAC 956
|||||||||| ||||||||||||| |||||||||||||||||||||| |||||| | |||
Sbjct 876 GGCCGCTAAAATGGTGGCGGAGGCGGCTGAAGCTGCATGGAAGAAAAGGCTTAAGTATAC 935
Query 957 GAAAATTGACGATATTACAGTAATATGTCTTTTCTTACAGAACAAGGAACAACCAAGTTG 1016
||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 936 GAAGGTAGATGATATTACAGTAATATGTCTTTTCTTACAGAACAAGGAACAACCAAGTTG 995
Query 1017 TACTATGCACACTTGA 1032
|||||| ||| ||||
Sbjct 996 AACTATGGACATTTGA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50585786029
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5