BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg326861

Length=444
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G26080.1 | Symbols:  | proline-rich family protein | chr5:91...   359    1e-98
  AT5G26070.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   207    5e-53


> AT5G26080.1 | Symbols:  | proline-rich family protein | chr5:9107997-9108422 
FORWARD LENGTH=426
Length=426

 Score =  359 bits (194),  Expect = 1e-98
 Identities = 370/450 (82%), Gaps = 32/450 (7%)
 Strand=Plus/Plus

Query  1    ATGGTGTCTCTAGGACTTTCCTACACCCTAGTTTTTCTCTTGGCAATCTTATTCACAGTT  60
            ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGTCTCTAGGAGTTTTCTACACCCTAGTTTTTCTCTTGGCAATCTTATTCACAGTT  60

Query  61   GGTGAAGCTAACAACAACAGAAAACTCCTGCAAACTCCCACTAACTACCAACCGCTATAT  120
              ||||||||||| ||||||||||||||| |||||| ||||||| ||||||||| |||||
Sbjct  61   TCTGAAGCTAACAGCAACAGAAAACTCCTCCAAACTACCACTAATTACCAACCGATATAT  120

Query  121  TCTCCTCCTCCTCCCCCGGTTTATTC--TCGTCCGGTTGCTCTTTctcctccacctccaa  178
            ||||||||||| || ||  || || |  || ||| ||| || || ||||||| || ||  
Sbjct  121  TCTCCTCCTCCACCGCC--TT-AT-CGATC-TCCAGTTACTATTCCTCCTCCTCCCCCGG  175

Query  179  tatattctcctcc--tc-ctactccgatctatccacctccagtatattctcctcctccta  235
            | ||||||| |||  |  ||  |||  ||  |||||||||| ||||||||||||||||| 
Sbjct  176  TTTATTCTCGTCCGGTTGCTTTTCC--TCC-TCCACCTCCAATATATTCTCCTCCTCCTC  232

Query  236  ctccgatctatccacctccagtatattctcctcctcctactccGATCTATTCACCTCCAG  295
            |||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||| 
Sbjct  233  CTCCGATCTATCCACCTCCAATATATTCTCCTCCTCCTCCTCCAATCTATCCACCTCCAA  292

Query  296  TATATTCTCCTCCCTC-TACTCCGATCTATCCACCTCCGGTTGCCCATCATCCTTCTCCT  354
            ||||||||||||| || |||||| || | |||||||||    |  ||||||||| | |||
Sbjct  293  TATATTCTCCTCC-TCCTACTCCAATTTCTCCACCTCCAAAAGTTCATCATCCTGCGCCT  351

Query  355  AAAGCTCAACCTTCTCCTAAAGCTCAAGCTTTCTACTACAGGCAATCTCCTCCACCTCCC  414
             ||||||||         ||||| |    || |||||| ||||||||||||||||| |||
Sbjct  352  CAAGCTCAA---------AAAGC-C----TT-CTACTATAGGCAATCTCCTCCACCCCCC  396

Query  415  TCCGGGA-AACCGTGGTGGTGGTTGTTGTA  443
            ||||| | |||| |||||||||||| ||||
Sbjct  397  TCCGG-ACAACCTTGGTGGTGGTTGCTGTA  425


 Score =  257 bits (139),  Expect = 5e-68
 Identities = 162/173 (94%), Gaps = 2/173 (1%)
 Strand=Plus/Plus

Query  123  TCCTCCTCCTCCCCCGGTTTATTCTCGTCCGGTTGCTCTTTc-tcctccacctccaatat  181
            ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct  159  TCCTCCTCCTCCCCCGGTTTATTCTCGTCCGGTTGCT-TTTCCTCCTCCACCTCCAATAT  217

Query  182  attctcctcctcctactccgatctatccacctccagtatattctcctcctcctactccga  241
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct  218  ATTCTCCTCCTCCTCCTCCGATCTATCCACCTCCAATATATTCTCCTCCTCCTCCTCCAA  277

Query  242  tctatccacctccagtatattctcctcctcctactccGATCTATTCACCTCCA  294
            |||||||||||||| |||||||||||||||||||||| || | | ||||||||
Sbjct  278  TCTATCCACCTCCAATATATTCTCCTCCTCCTACTCCAATTTCTCCACCTCCA  330


> AT5G26070.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr5:9106341-9106649 FORWARD LENGTH=309
Length=309

 Score =  207 bits (112),  Expect = 5e-53
 Identities = 159/180 (88%), Gaps = 9/180 (5%)
 Strand=Plus/Plus

Query  1    ATGGTGTCTCTAGGACTTTCCTACACCCTAGTTTTTCTCTTGGCAATCTTATTCACAGTT  60
            |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGTCTCTAGGACTTTCCTTCACTCTAGTTTTTCTCTTGGCAATCTTATTCACAGTT  60

Query  61   GGTGAAGCTAACAACAACAGAAAACTCCTGCAAACTCCCACTAACTACCAACCGCTATAT  120
            | ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct  61   GCTGAAGCTAACAACAACAGAAAACTCTTGAAAACTCCCACTAACTACCAACCACTATAT  120

Query  121  TCTCCTCCTCC-TCCCCCGGTTTATTC--TCGTCCGGTTGCTCTTTctcctccacctcca  177
            |||||| |||| || ||   || || |  || ||| ||| ||||| ||||||| ||||||
Sbjct  121  TCTCCTTCTCCATCGCC---TT-AT-CGGTC-TCCAGTTACTCTTCCTCCTCCTCCTCCA  174


 Score =  108 bits (58),  Expect = 6e-23
 Identities = 77/86 (90%), Gaps = 2/86 (2%)
 Strand=Plus/Plus

Query  359  CTCAACCTTCTCCTAAAGCT-CAAGCTTTCTACTACAGGCAATCTCCTCCACCTCCCTCC  417
            |||| ||||||||| | |||  |||  |||||||||||||||||||||||||||||||||
Sbjct  224  CTCATCCTTCTCCTCATGCTGAAAG-ATTCTACTACAGGCAATCTCCTCCACCTCCCTCC  282

Query  418  GGGAAACCGTGGTGGTGGTTGTTGTA  443
            || ||||| |||||||||||||||||
Sbjct  283  GGAAAACCTTGGTGGTGGTTGTTGTA  308



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21112454580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5