BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326886
Length=2247
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | ... 3735 0.0
> AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3)
| chr5:9284986-9289003 REVERSE LENGTH=2933
Length=2933
Score = 3735 bits (2022), Expect = 0.0
Identities = 2176/2251 (97%), Gaps = 8/2251 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCGACGGTAGGAGTTCCATCACTTTACCAAGTTCCTCACCTTGAAATCTCCAAA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 133 ATGGCGTCGACGGTAGGAGTTCCATCACTATACCAAGTTCCTCACCTTGAAATCTCCAAA 192
Query 61 CCCAATTCCAAAAAGAGGTCTAATTGCTTCTCTTTATCTCTCGATAAGCCTTTCTTCACT 120
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 193 CCCAATTCCAAAAAGAGGTCTAATTGTTTATCTTTATCTCTCGATAAGCCTTTCTTCACT 252
Query 121 CCTCCTATCTCTCTTGCTCGTAGAACTCGTCTTATCCATTCCTCTTCTCTTCTTGTTCCT 180
| ||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 253 -C-CCT-TATCTCTTGTTCGTAGAACTCGTCGTATCCATTCCTCTTCTCTTCTTGTTCCT 309
Query 181 TCTGCTGTTGCTACCCCTAATTCTGTTCTTAGTGAAGAAGCTTTCAAAAGTCTTGGTCTT 240
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 310 TCTGCTGTTGCTACTCCTAATTCTGTTCTCAGTGAAGAAGCTTTCAAAAGTCTTGGTCTT 369
Query 241 TCTGACCATGACGAGTATGACCTTGACGGTG---ACAACAACGTTGAAGCTGATGATGGT 297
|||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||
Sbjct 370 TCTGACCATGACGAATATGACCTTGACGGCGACAACAACAACGTTGAAGCTGATGATGGT 429
Query 298 GAAGAGCTTGCTATCTCTAAACTTAGTTTGCCTCAGCGTCTTGAAGAGTCTCTTGAGAAG 357
||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 430 GAAGAACTCGCTATCTCTAAACTTAGTTTGCCTCAACGTCTTGAAGAGTCTCTTGAGAAA 489
Query 358 CGTGGTATTACTCATCTCTTCCCCATTCAGAGAGCTGTGTTGGTACCTGCACTGCAAGGA 417
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 CGTGGTATCACTCATCTCTTCCCCATTCAGAGAGCTGTGTTGGTACCTGCACTGCAAGGA 549
Query 418 AGAGATATTATAGCTCGTGCAAAGACAGGAACTGGAAAGACTTTAGCTTTTGGTATCCCT 477
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 550 AGAGATATTATAGCTCGTGCAAAGACAGGAACTGGAAAGACTTTGGCTTTTGGTATTCCT 609
Query 478 ATCATTAAACGTCTCACTGAAGAAGCTGGAGACTACACTGCTTTCAGGAGGTCTGGTCGT 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 ATCATTAAACGTCTCACTGAAGAAGCTGGAGACTACACTGCTTTCAGGAGGTCTGGTCGT 669
Query 538 CTTCCTAAGTTCCTTGTTCTTGCGCCGACTCGAGAGCTGGCTAAGCAAGTGGAGAAGGAG 597
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 670 CTTCCTAAGTTCCTTGTCCTTGCGCCGACCCGAGAGCTGGCTAAGCAAGTGGAGAAGGAG 729
Query 598 ATTAAGGAGTCTGCACCTTATTTGAGTACCGTTTGTGTGTATGGTGGG-GTTTCTTACAC 656
|||||||||||||||||||||||||| || |||||||||||||| ||| |||||||| ||
Sbjct 730 ATTAAGGAGTCTGCACCTTATTTGAGCACTGTTTGTGTGTATGG-GGGAGTTTCTTATAC 788
Query 657 CATTCAGCAGAGTGCTTTGACTCGTGGTGTTGATGTTGTTGTTGGAACTCCTGGGAGGAT 716
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 789 CATTCAGCAGAGTGCTTTAACTCGTGGTGTTGATGTTGTTGTTGGAACTCCTGGAAGAAT 848
Query 717 CATTGATTTGATTGAAGGAAGGAGTCTTAAATTGGGAGAAGTCGAGTATTTGGTACTTGA 776
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 849 CATTGATTTGATTGAAGGAAGGAGTCTTAAATTGGGAGAAGTTGAGTATTTGGTACTTGA 908
Query 777 TGAAGCTGATCAGATGCTTGCTGTTGGTTTTGAGGAGGCCGTGGAATCGATTCTTGAGAA 836
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 909 TGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGCCGTGGAATCGATTCTTGAGAA 968
Query 837 TCTCCCAACTAAGCGACAAAGTATGCTTTTCTCAGCTACTATGCCTACTTGGGTTAAGAA 896
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 969 TCTTCCAACTAAGCGACAAAGTATGCTTTTCTCAGCAACTATGCCTACTTGGGTTAAGAA 1028
Query 897 GTTGGCGAGGAAGTACCTTGACAATCCCTTGAACATTGATCTGGTTGGAGACCAAGATGA 956
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1029 GTTGGCGAGGAAGTACCTTGACAATCCCTTGAATATTGATCTGGTTGGAGACCAAGATGA 1088
Query 957 GAAGCTAGCAGAGGGGATCAAACTTTATGCAATCGCAACCACATCAACATCAAAACGCAC 1016
|||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1089 GAAGCTCGCAGAGGGTATCAAACTTTATGCAATCGCAACCACATCGACATCAAAACGCAC 1148
Query 1017 TATTCTAAGCGACCTTATAACAGTGTATGCGAAGGGTGGCAAGACCATTGTTTTTACTCA 1076
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1149 TATTCTAAGCGACCTTATTACAGTGTATGCGAAGGGTGGCAAGACCATTGTTTTTACCCA 1208
Query 1077 AACTAAAAGAGATGCAGACGAAGTTTCTCTTGCATTGTCAAACAGTATAGCTACCGAAGC 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 AACTAAAAGAGATGCAGACGAAGTTTCTCTTGCATTGTCAAACAGTATAGCTACCGAAGC 1268
Query 1137 ACTTCATGGAGATATATCCCAGCATCAAAGAGAGAGAACACTCAATGCTTTCCGCCAAGG 1196
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1269 ACTTCATGGAGATATATCTCAGCATCAAAGAGAGAGAACACTCAATGCTTTCCGTCAAGG 1328
Query 1197 GAAATTCACTGTATTAGTTGCCACTGATGTTGCATCTCGTGGACTTGACATCCCAAACGT 1256
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1329 GAAATTCACCGTATTAGTTGCCACTGATGTTGCATCTCGTGGACTTGACATCCCGAACGT 1388
Query 1257 AGATCTAGTTATCCACTATGAACTTCCTAATGACCCAGAGACTTTTGTGCACCGTTCTGG 1316
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1389 AGATCTAGTTATCCACTATGAACTTCCTAATGACCCAGAAACTTTTGTGCACCGTTCTGG 1448
Query 1317 TCGTACTGGGCGTGCAGGGAAAGAAGGCTCTGCCATTCTCATGCACACCAGCAGCCAAAA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 TCGTACTGGGCGTGCAGGGAAAGAAGGCTCTGCCATTCTCATGCACACCAGCAGCCAAAA 1508
Query 1377 GAGAACAGTGAGGTCTCTGGAGCGTGACGTAGGCTGCCATTTTGAATTCATTAGCCCACC 1436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 GAGAACAGTGAGGTCTCTGGAGCGTGACGTAGGCTGCCATTTTGAATTCATTAGCCCACC 1568
Query 1437 AACTGTTGGAGACTTGTTGGAATCGTCAGCAGACCAAGTGGTGGCCACTCTAAATGCTGT 1496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1569 AACTGTTGGAGACTTGTTGGAATCGTCAGCAGACCAAGTGGTGGCCACTCTAAATGGTGT 1628
Query 1497 CCACCCTGACTCGATAAAGTTTTTCTCAGCAACTGCTCAAAAACTATATGAGGAAAAAGG 1556
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1629 TCACCCTGACTCCATAAAGTTTTTCTCAGCAACTGCTCAAAAACTATATGAGGAGAAAGG 1688
Query 1557 AACAGATGCTTTAGCTGCAGCTCTAGCTCACCTGAGCGGTTTCTCTCAGCCGCCTTCATC 1616
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1689 AACAGATGCTTTAGCTGCAGCTCTAGCTCACCTGAGTGGTTTCTCTCAGCCGCCTTCATC 1748
Query 1617 AAGATCTCTCCTCAGCCATGAGAAGGGATGGGTGACTTTGCAATTGATCCGAGATCCAAC 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749 AAGATCTCTCCTCAGCCATGAGAAGGGATGGGTGACTTTGCAATTGATCCGAGATCCAAC 1808
Query 1677 AAACGCTAGAGGCTTTCTGTCTGCGAGGTCTGTTACTGGTTTTCTTTCCGATGTTTACCG 1736
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1809 GAACGCTAGAGGCTTTCTGTCTGCGAGGTCTGTTACTGGTTTTCTTTCCGATCTTTACCG 1868
Query 1737 TACAGCTGCAGATGAAGTTGGAAAAATCTTCTTGATCGCAGATGACAGGGTCCAAGGAGC 1796
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1869 TACAGCTGCAGATGAAGTTGGAAAAATCTTCTTGATCGCCGATGACAGGATCCAAGGAGC 1928
Query 1797 TGTTTTTGATCTACCAGAGGAAATCGCGAAAGAGCTCCTAGAGAAAGAAGTGCCAGAAGG 1856
||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||||
Sbjct 1929 TGTATTTGATCTACCAGAGGAGATCGCGAAAGAGCTCCTAGAGAAAGATGTCCCCGAAGG 1988
Query 1857 AAACAGTTTATCCATGATAACCAAGTTACCTCCACTGCAAGATGATGGACCGTCTAGTGA 1916
|||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||
Sbjct 1989 CAACAGTTTATCCATGATAACAAAGTTACCTCCACTTCAAGATGACGGACCATCTAGTGA 2048
Query 1917 TAACTATGGACGGTTCTCTAGCAGAGACAGGATGCCTAGAGGAGGAGGAGGTTCTAGAGG 1976
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 TAACTACGGACGGTTCTCTAGCAGAGACAGGATGCCTAGAGGAGGAGGAGGTTCTAGAGG 2108
Query 1977 GTCAAGAGGCGGTAGAGGAGGATCATCACGAGGCCGTGATAGTTGGGGAGGTGATGATGA 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2109 GTCAAGAGGCGGTAGAGGAGGATCATCACGAGGCCGTGATAGTTGGGGAGGTGATGATGA 2168
Query 2037 CAGAGGAAGTAGAAGGAGCAGTGGCGGAGGAAGCAGCTGGTCCCGTGGTGGTAGTAGTTC 2096
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2169 CAGAGGTAGTAGAAGGAGCAGTGGTGGAGGAAGCAGCTGGTCCCGAGGTGGTAGTAGTTC 2228
Query 2097 CAGAGGAAGTTCTGATGATTGGTTGATCGGTGGCAGAAGTTCATCAAGCAGCAGAGCTCC 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2229 CAGAGGAAGTTCTGATGATTGGTTGATCGGTGGCAGAAGTTCATCAAGCAGCAGAGCTCC 2288
Query 2157 TTCGCGAGAGAGAAGTTTTGGAGGTTCTTGCTTCATTTGTGGGAAATCAGGACACAGGGC 2216
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 2289 TTCGCGGGAGAGAAGTTTTGGAGGTTCATGCTTCATTTGTGGGAAATCTGGACACAGGGC 2348
Query 2217 AACAGATTGTCCTGACAAGAGAGGATTTTAG 2247
||||||||||||||| |||||||||||||||
Sbjct 2349 AACAGATTGTCCTGATAAGAGAGGATTTTAG 2379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111495410445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5