BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326902
Length=3444
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26770.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 1550 0.0
AT5G26760.2 | Symbols: | unknown protein; CONTAINS InterPro DO... 952 0.0
> AT5G26770.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G05830.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr5:9407826-9410018 REVERSE LENGTH=1446
Length=1446
Score = 1550 bits (839), Expect = 0.0
Identities = 932/978 (95%), Gaps = 2/978 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGATTCCGTCAAAACGACGGTGGATCCGCTTTTGAAAGATTTAGATGGTAAAAAA 60
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 284 ATGTCGGATTCCGTCAAAACGACGGTGGATCCGCTTTTGAAAGATTTGGATGGGAAAAAA 343
Query 61 GAGAGTTTTAGGAGAAACGTGGTGTCTATGGCGGCTGAGCTT-AAGCAAGTGAGAGGTCG 119
|||||||| ||| | ||||| ||||||||||| |||||| || |||||||||||||||||
Sbjct 344 GAGAGTTTCAGGCGGAACGTTGTGTCTATGGCAGCTGAG-TTAAAGCAAGTGAGAGGTCG 402
Query 120 TTTGGTTTCTCAAGAACAATTCTTTGTTAAAGAAAGCTTTTGTAGAAAAGAAGCAGAGAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 TTTGGTTTCTCAAGAACAATTCTTTGTTAAAGAAAGCTTTTGTAGAAAAGAAGCAGAGAA 462
Query 180 GAAAGCTAAGAATATGGAAATGGAGATCTGTAAATTGCAGAAGAAATTGGAAGATAGAAA 239
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 463 GAAAGCTAAGAACATGGAAATGGAGATCTGTAAATTGCAGAAGAAGTTGGAAGATAGAAA 522
Query 240 TTGTGAGCTTGAAGCTTCTACTTCTGCTGCTGAAAAGTTTCTTGAAGAAGTGGACGATCT 299
||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 523 TTGTGAGCTTGTAGCTTCAACTTCTGCTGCTGAAAAGTTTCTAGAAGAAGTGGACGATCT 582
Query 300 GAGATCGCAGCTAGCTTTAACAAAGGAAATTGCAGAAACAAGCGCTGCTTCTGCTCAATC 359
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 583 GAGATCACAGCTAGCTTTAACAAAGGACATTGCAGAAACAAGTGCTGCTTCTGCTCAATC 642
Query 360 CGCACAGCTTCAATGCTCGGTGCTAACAGAACAACTTGACGACAAAACACGATATCTAAG 419
|||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 643 CGCACAGCTTCAATGCTCAGTGCTAACAGAACAACTTGACGACAAAACACGTTCTCTAAG 702
Query 420 AGAACACGAAGACCGTGTAACTCAGCTCGGTCACCAGCTTGATAACCTTCAGAGAGATTT 479
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 703 AGAACACGAAGACCGTGTAACTCATCTCGGTCACCAGCTTGATAATCTTCAGAGAGATTT 762
Query 480 GAGGACAAGAGAATGTTCTCAAAAACAGCTTAGAGAAGAAGTTATGAGAATCGAGCGTGA 539
|| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 763 GAAGACAAGAGAATGTTCTCAAAAACAGCTGAGAGAGGAAGTTATGAGAATCGAGCGTGA 822
Query 540 GATAACTGAAGCTGTTGCAAAGTCTGGGAAAGGCACAGAATGTGAGCTCAGGAAACTTCT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GATAACTGAAGCTGTTGCAAAGTCTGGGAAAGGCACAGAATGTGAGCTCAGGAAACTTCT 882
Query 600 GGAAGAGGTTTCTCCAAAGAATTTTGAGAGAATGAACAAGTTATTGGCGGTAAAAGACGA 659
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 883 TGAAGAGGTTTCTCCAAAGAACTTTGAGAGAATGAACATGTTATTGGCGGTAAAAGACGA 942
Query 660 AGAGATTGCAAAATTAAAAGATGATGTAAAGTTAATGTCAGCTCATTGGAAACTCAAGAC 719
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 943 AGAGATTGCAAAGTTAAAAGATGATGTGAAGTTAATGTCAGCTCATTGGAAACTCAAAAC 1002
Query 720 TAAAGAACTTGAATCTCAGCTGGAGAGACAAAGAAGAGCAGATCAAGAGTTGAAGAAGAA 779
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 TAAGGAACTTGAATCTCAGTTGGAGAGACAAAGAAGAGCAGATCAAGAGTTGAAGAAGAA 1062
Query 780 GGTCCTGAAACTGGAGTTCTGTCTGCAAGAAGCTCGTAGCCAGACAAGAAAGCTACAGAG 839
||| |||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1063 GGTACTGAAACTAGAGTTTTGCCTGCAAGAAGCTCGTAGTCAGACAAGAAAGCTACAGAG 1122
Query 840 GGCGGGGGAGAGGCGAGACAAGGCAATCAAAGAGCTAAGGGATCAGATTACCGGAAAAGA 899
|||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 1123 GGCGGGGGAGAGACGAGACAAGGCAATCAAAGAGCTAAGTGATCAGATTACTGGAAAACA 1182
Query 900 GTTGAATGAATCGGTTTCAAGGGAGAAACCAAACTTCTGGGATACTTCAGGGTTCAAGAT 959
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1183 GTTGAATGAATCGGTTTCAGGGGAGAAACAAAACTTCTGGGATACTTCAGGGTTCAAGAT 1242
Query 960 CGTCGTGTCAATGTCGAT 977
||| ||||||||||||||
Sbjct 1243 CGTTGTGTCAATGTCGAT 1260
> AT5G26760.2 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF408 (InterPro:IPR007308);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991;
Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source:
NCBI BLink). | chr5:9403680-9407301 REVERSE LENGTH=2528
Length=2528
Score = 952 bits (515), Expect = 0.0
Identities = 584/618 (94%), Gaps = 2/618 (0%)
Strand=Plus/Plus
Query 2016 TGAAATATTTAAGGACATTAAGAATTTCGGGTTTGATGAGATGGGTCTTGAGAGTTCTGC 2075
||||||| ||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1007 TGAAATAGAGAAGGATTTTAAGAATTTTGGGTTTGATGAGATGGGTCTTGCGAGTTCTGC 1066
Query 2076 TATTATGAGTGATGGATACAGCGTAGAATATAGTGTGTCTAAGCAACCACAATGTTCAAT 2135
||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1067 TATGATGAGTGATGGATACGGCGTAGAATATAGTGTGTCTAAGCAGCCACAATGTTCGAT 1126
Query 2136 GGAAGATTCTCTTAGTTGCAATCTAAAAGGAGGTCTTCAGACTTTGGACGGGAAAAATAC 2195
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1127 GGAAGATTCTCTTAGTTGCAAGCTAAAAGGAGATCTTCAGACTTTGGACGGGAAAAATAC 1186
Query 2196 TCTATCAGGATCCTCTTCTGGTTCTAATACGAGGGGCTCGAGGACAAAACCAGAAAAATC 2255
||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||
Sbjct 1187 CCTATCAGGATCCTCTTCTGGTTCTAATACGAAGGGCTCGAAGACAAAACCAGAGAAATC 1246
Query 2256 AGGAAAGAAAATTATTTCTGTTGAATACCATACTAATTCTTATGAAGATGGTGAAGAAAT 2315
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1247 AAGAAAGAAAATTATTTCTGTTGAATACCATGCTAATTCTTATGAAGATGGTGAAGAAAT 1306
Query 2316 CCTTGCAGCTGAATCGTATGAAAGACACAAAGCTCAGGATGTGTGTTCATCAAGTGAAAC 2375
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1307 CCTTGCAGCTGAATCGTATGAAAGACATAAAGCTCAGGATGTGTGTTCATCAAGTGAAAT 1366
Query 2376 CGTCACTAAATCATGCCTTAAAATTTCTGGCTCTAAGAAGCTTAGTCGTTCAGTTACTTG 2435
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1367 CGTCACTAAATCATGCCTTAAAATTTCTGGCTCGAAGAAGCTTAGTCGTTCAGTTACTTG 1426
Query 2436 GGCCGATCAGAATGATGGCCGTGGTGATCTTTGTGAGGTTAAAAACCATGATATCACAGC 2495
||||||||||||||||||||||||||||||||||||||||| |||| |||||| | ||||
Sbjct 1427 GGCCGATCAGAATGATGGCCGTGGTGATCTTTGTGAGGTTAGAAACAATGATAACGCAGC 1486
Query 2496 AGCTCCTAGCCTGCCTTCTACTGATACAGAGGATGTCAATAGTGTATCACGCCTTGCATT 2555
|| |||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||
Sbjct 1487 AGGTCCTAGCCTGTCTTCTAATGATATAGAGGATGTCAATAGTTTATCACGCCTTGCATT 1546
Query 2556 AGCAGAAGCC-TGTGCTACGGCATTGAGCCAGGCTGCCGAAGCTGTTTCTTCGGGAGATT 2614
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1547 AGCAGAAGCCCT-TGCTACGGCATTGAGCCAGGCTGCCGAAGCTGTTTCTTCGGGAAATT 1605
Query 2615 CAGATGCAAGTGATGCCA 2632
||||||||||||||||||
Sbjct 1606 CAGATGCAAGTGATGCCA 1623
Score = 843 bits (456), Expect = 0.0
Identities = 539/578 (93%), Gaps = 9/578 (2%)
Strand=Plus/Plus
Query 982 TTTCGATTTCCTTTTGACGGAAAAATGGCAAAGGATGATGAAGCAATCGCCATTAACGAT 1041
|||| |||| | |||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 110 TTTCAATTT-CGTTTG-CAGAAAAATGGCAAAGGATAATGAAGCAATCGCCATTAACGAT 167
Query 1042 GCGGTTCACAAGCTTCAGCTCGCTATGCTCGAAGATATCACTGATCAGAACCAGCTCTTC 1101
||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 168 GCGGTTCACAAGCTTCAGCTCTATATGCTCGAAAATACCACTGATCAGAACCAGCTCTTC 227
Query 1102 GCGGCGGGGAAGTTAATTTCTCGATTAGACTACGAAGATGTCGTCACTGAACGAACGATC 1161
|||||| |||||||||| ||||||| ||| |||||||||||||||||||||||| | |||
Sbjct 228 GCGGCGAGGAAGTTAATGTCTCGATCAGATTACGAAGATGTCGTCACTGAACGAGCAATC 287
Query 1162 GCTAAGCTCTGTGGTTATCCTCTTTGCCGGAGATTTCTCCCTTCCGATGTTTCTAGAAGA 1221
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 288 GCTAAGCTCTGTGGTTATACTCTTTGCCAGAGATTTCTCCCTTCCGATGTTTCTAGAAGA 347
Query 1222 GGAAAGTATCGGATCTCGTTGAAGGAGCATAAGGTTTACGATTTGCAGGAGACGAGAAAG 1281
|| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 348 GGGAAGTATCGGATTTCGTTGAAGGACCATAAGGTTTACGATTTACAGGAGACGAGCAAG 407
Query 1282 TTTTGCTCGGCGGGTTGTTTAATTGATAGCAAAGCGTTTTCGGGGACTTTGCAAGAGGCT 1341
|||||||| || ||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 408 TTTTGCTCCGCTGGTTGTTTAATTGATAGCAAAACGTTTTCGGGGAGTTTGCAAGAGGCT 467
Query 1342 CGTACATCGGAGTTTGATTCGGTGAAGTTGAATGAGATTTTGGGA-TTGTTTGGTGATTC 1400
||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 468 CGTACATTGGAGTTTGATTCGGTGAAGTTGAATGAGATTTT-GGATTTGTTTGGTGATTC 526
Query 1401 ---GGAAGTGAAAGGTTCTTTGGATGTGAATAAGGATTTGGATTTGTCTAAGCTTATGAT 1457
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TTTGGAAGTGAAAGGTTCTTTGGATGTGAATAAGGATTTGGATTTGTCTAAGCTTATGAT 586
Query 1458 TCGGGAGAATTTTGAA-TTGAGAGGTGAAGAATTGTCTTTAGAGCAGTGGATGGGTCCTT 1516
| ||||||||||| | || |||||||||||||||||||||||| |||||||||||||||
Sbjct 587 TAAGGAGAATTTTGGAGTT-AGAGGTGAAGAATTGTCTTTAGAGAAGTGGATGGGTCCTT 645
Query 1517 CTAATGCTGTTGAAGGTTATGTTCCTTTTGATCGAAGC 1554
||||||||||||||||||||||||||||||||||||||
Sbjct 646 CTAATGCTGTTGAAGGTTATGTTCCTTTTGATCGAAGC 683
Score = 811 bits (439), Expect = 0.0
Identities = 487/511 (95%), Gaps = 0/511 (0%)
Strand=Plus/Plus
Query 2773 GAGGAACATAGCGAGGAGGAAATGACTGAAGAGGAACCAACTCTTCTCAAGTGGCCAAAT 2832
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1683 GAGGAACATAGTGAGGAGGAAATGACTGAAGAGGAACCAACTCTTCTCAAGTGGCCAAAT 1742
Query 2833 AAGCCCGGGATTCCAGATTCTGATTTGTTTGACCGTGATCAATCGTGGTTTGATGGACCT 2892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1743 AAGCCCGGGATTCCAGATTCTGATTTGTTTGACCGTGATCAATCGTGGTTTGATGGACCT 1802
Query 2893 CCAGAGGGCTTCAATCTCACATTATCAAATTTTGCTGTGATGTGGGATTCACTGTTTGGC 2952
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1803 CCAGAGGGCTTCAATCTCACATTATCAAATTTCGCTGTGATGTGGGATTCACTGTTTGGC 1862
Query 2953 TGGGTATCATCGTCCTCTCTGGCATACATATATGGGAAGGAAGAATCTGCTCATGAGGAG 3012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 TGGGTATCATCGTCCTCTCTGGCATACATATATGGGAAGGAAGAATCTGCTCATGAGGAG 1922
Query 3013 TTCATATCAGTTAACGGGAAGGAGTACCCCCGGAGGATTATCCTGGGAGACGGGCTTTCC 3072
||| ||| ||||||||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 1923 TTCTTATTGGTTAACGGGAAGGAGTACCCCCGGAGGATTATCATGGTAGATGGGCTTTCC 1982
Query 3073 TCAGAAATCAAGGAGACAATGGCTGGGTGCCTTGCCAGAGCTTTACCTAGAGTCACCAGT 3132
||||| |||||| ||||||| |||||||||||||||||||||||||| |||||| || |
Sbjct 1983 TCAGAGATCAAGCAGACAATTGCTGGGTGCCTTGCCAGAGCTTTACCGAGAGTCGTCACT 2042
Query 3133 TATCTCAGGCTGCCAATAGCAATATCCGAGTTGGAAAAGGGACTGGGAAGCTTGTTGGAG 3192
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 2043 CATCTCAGGCTGCCAATAGCGATATCCGAGTTAGAAAAGGGACTGGGAAGCTTGTTGGAG 2102
Query 3193 ACAATGTCGTTGACTGGGGCAGTTCCATCATTTAAGATTAAAGAATGGCTAGTGATTGTT 3252
|||||||||||||| || |||||||||||||||| | | |||||||||||||||||||||
Sbjct 2103 ACAATGTCGTTGACAGGAGCAGTTCCATCATTTAGGGTAAAAGAATGGCTAGTGATTGTT 2162
Query 3253 CTTCTTTTCTTGGACGCGTTGTCTGTATCAC 3283
|||||||||||||| ||||||||||||||||
Sbjct 2163 CTTCTTTTCTTGGATGCGTTGTCTGTATCAC 2193
Score = 370 bits (200), Expect = 5e-101
Identities = 237/254 (93%), Gaps = 5/254 (2%)
Strand=Plus/Plus
Query 1610 ATTCCAAGG---CTACTCAAAGTAATCAAGAGAAGCATGAGATGGATTTCACTAGCACAG 1666
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 ATTCCAAGGCTACTACTCAAAGTAATCAAGAGAAGCATGAGATGGATTTCACTAGCACAG 756
Query 1667 TAATTATGCCTGATGAATA-TAGTGTTCCAAAGCTTCCTCTGCAAACCAAGCAAGCTTCT 1725
||||||||||||||| || ||||||| |||||||||| | |||||||||||||||||||
Sbjct 757 TAATTATGCCTGATGT-TAATAGTGTTTCAAAGCTTCCACCGCAAACCAAGCAAGCTTCT 815
Query 1726 CCTGTTGGGGAATCTGATGATGGCAAAGGGAAAACAGTTCTGAAAGAGCAAACTGTAGTT 1785
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 ACTGTTGTGGAATCTGTTGATGGCAAAGGGAAAACAGTTCTGAAAGAGCAAACTGTAGTT 875
Query 1786 CCTCCAACCAAAAAAGTTTCGAGGTTTCGTCGTGAAAAAGAAAAGGAAAAGAAGACTTCC 1845
||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||| |
Sbjct 876 CCTCCCACCAAAAAAGTTTCGAGATTTCGTCGTGAGAAAGAAAAGGAGAAGAAGACTTTC 935
Query 1846 GGGGTTGATGGGAT 1859
||||||||||||||
Sbjct 936 GGGGTTGATGGGAT 949
Score = 156 bits (84), Expect = 2e-36
Identities = 92/96 (96%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 2684 CTGCGAAAGCTGGAATCGTTTTGTTGCCAAGCACACATCAACTTGACGAAGAGGTTACTG 2743
|||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1624 CTGCAAAAGCTGGAATCATTTTGTTGCCCAGCACACATCAACTTGACGAAGAGGTTACTG 1683
Query 2744 AGGAACATAGCGAGGAGGAAATGACTGAAGAGGAAC 2779
|||||||||| |||||||||||||||||||||||||
Sbjct 1684 AGGAACATAGTGAGGAGGAAATGACTGAAGAGGAAC 1719
Score = 95.3 bits (51), Expect = 4e-18
Identities = 58/61 (95%), Gaps = 1/61 (2%)
Strand=Plus/Plus
Query 3385 GAA-GATATCCTATTACCACTTGGCCGTGTTCCTCAGTTTGCTACCCGAAGCGGGGCTTA 3443
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2279 GAAGGATATCCTGTTACCACTTGGCCGTGTTCCTCAGTTTGCTACCCGAAGCGGGGCGTA 2338
Query 3444 G 3444
|
Sbjct 2339 G 2339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 171420444231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5