BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326904
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26800.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 516 6e-146
AT3G05810.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 250 7e-66
> AT5G26800.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; CONTAINS InterPro DOMAIN/s: IGR protein motif
(InterPro:IPR019083); BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G05810.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:9425151-9426711
FORWARD LENGTH=638
Length=638
Score = 516 bits (279), Expect = 6e-146
Identities = 320/340 (94%), Gaps = 2/340 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTGGATGCGACTGATACAGAGCGCGAGATCTGCTC-TAAGAGCCGAACCAACGCC 59
||||||||||||||||||||||||||||||||||||| || || || | | |||| || |
Sbjct 74 ATGGCGTGGATGCGACTGATACAGAGCGCGAGATCTGTTCTTACGA-CAGCACCAGCGTC 132
Query 60 GTCGACTCTTAACTTCCCTAGATTCTACTCCAAATCCGCCGCTCCTTATCCCGTGAAAGT 119
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 133 TTCGACTCTTAACTTCCATAGATTCTACTCCAAATCCGCCGCTCCTTATCACGTGAAAGT 192
Query 120 TGGAATTCCTGAGTTTTTGAGTGGGATTGGAGGAGGAGTTGAGACTCATATTGCTAAACT 179
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 193 TGGAATTCCTGAGTTTTTGAGTGGGATTGGTGGAGGAGTTGAGACTCATATTGCTAAGCT 252
Query 180 TGAAACCGAGTTAGGCGATCTTCCGAAGCTGCTCGTGACTCGTACGCTTAGACTCAAGAA 239
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 253 TGAAACCGAGTTAGGCGATCTTCCGAAATTGCTCGTGACTCGTACGCTTAGACTCAAGAA 312
Query 240 GTTCGGTATCCCTTGCAAACATAGGAAACTGATACTGAAATATAGCCACAAATACAGGCT 299
||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 313 GTTTGGTATTCCTTGCAAACATAGGAAATTGATACTGAAATATAGCCACAAATACAGGCT 372
Query 300 AGGTCTATGGAAACCTAGAGCTGATGCTATAAAGGCGTGA 339
|||||||||||||||||||||||| || ||||||||||||
Sbjct 373 AGGTCTATGGAAACCTAGAGCTGACGCAATAAAGGCGTGA 412
> AT3G05810.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IGR protein
motif (InterPro:IPR019083); BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G26800.1); Has 62
Blast hits to 62 proteins in 14 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). | chr3:1730976-1732384
REVERSE LENGTH=685
Length=685
Score = 250 bits (135), Expect = 7e-66
Identities = 281/349 (81%), Gaps = 20/349 (6%)
Strand=Plus/Plus
Query 1 ATGGCGTGGATGCGACTGATACAGAGCGCGAGATCTGCTCTAAGAGCCGAAC-CAA-CGC 58
|||||||||| ||| |||| |||||||||||| | ||||| || | | | | ||| ||
Sbjct 64 ATGGCGTGGACACGATTGATTCAGAGCGCGAGAGCAGCTCT-AGGGAC-AGCGCAATCG- 120
Query 59 CG-TCGACTCTTAACTTCCCTAGATT---CTACTCCAAATCCGCCGCTC-CTTATCCCGT 113
| ||||||||| | |||||||||| || ||||||| | | || | ||||| |||
Sbjct 121 TGCTCGACTCTTGGCCTCCCTAGATTCCACTCCTCCAAA--C-CAGC-CACTTATTTCGT 176
Query 114 GAAAGTTGGAATTCCTGAGTTT-TTGAGTGGGATTGGAGGAGGAGTTGAGACTCATATTG 172
||| || || ||||| |||||| | | ||||||||||| |||||| ||||||||| ||||
Sbjct 177 GAAGGTAGGGATTCCAGAGTTTCTAG-GTGGGATTGGAAGAGGAGCTGAGACTCACATTG 235
Query 173 CTAAACTTGAAACCGAG-TTAGGCGATCTTCCGAAGCTGCTCGTGACTCGTACGCTTAGA 231
| ||| ||||||| ||| || || || |||| ||||| || ||||| ||||| || |||
Sbjct 236 CCAAAATTGAAACTGAGATT-GGTGACCTTCATAAGCTTCTTGTGACGCGTACTCTCAGA 294
Query 232 CTCAAG-AAGTTCGGTATCCCTTGCAAACATAGGAAACTGATACTGAAATATAGCCACAA 290
|||||| || || || || ||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 295 CTCAAGAAACTT-GGCATTCCTTGCAAACATAGGAAACTGATACTGAAGTATGGCCAGAA 353
Query 291 ATACAGGCTAGGTCTATGGAAACCTAGAGCTGATGCTATAAAGGCGTGA 339
||||||| |||| |||||||||||||||||||| ||||| ||||| |||
Sbjct 354 ATACAGGTTAGGGCTATGGAAACCTAGAGCTGACGCTATTAAGGCCTGA 402
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15834340935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5