BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg326904 Length=339 Score E Sequences producing significant alignments: (Bits) Value AT5G26800.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 516 6e-146 AT3G05810.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 250 7e-66 > AT5G26800.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: IGR protein motif (InterPro:IPR019083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:9425151-9426711 FORWARD LENGTH=638 Length=638 Score = 516 bits (279), Expect = 6e-146 Identities = 320/340 (94%), Gaps = 2/340 (1%) Strand=Plus/Plus Query 1 ATGGCGTGGATGCGACTGATACAGAGCGCGAGATCTGCTC-TAAGAGCCGAACCAACGCC 59 ||||||||||||||||||||||||||||||||||||| || || || | | |||| || | Sbjct 74 ATGGCGTGGATGCGACTGATACAGAGCGCGAGATCTGTTCTTACGA-CAGCACCAGCGTC 132 Query 60 GTCGACTCTTAACTTCCCTAGATTCTACTCCAAATCCGCCGCTCCTTATCCCGTGAAAGT 119 |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 133 TTCGACTCTTAACTTCCATAGATTCTACTCCAAATCCGCCGCTCCTTATCACGTGAAAGT 192 Query 120 TGGAATTCCTGAGTTTTTGAGTGGGATTGGAGGAGGAGTTGAGACTCATATTGCTAAACT 179 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 193 TGGAATTCCTGAGTTTTTGAGTGGGATTGGTGGAGGAGTTGAGACTCATATTGCTAAGCT 252 Query 180 TGAAACCGAGTTAGGCGATCTTCCGAAGCTGCTCGTGACTCGTACGCTTAGACTCAAGAA 239 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 253 TGAAACCGAGTTAGGCGATCTTCCGAAATTGCTCGTGACTCGTACGCTTAGACTCAAGAA 312 Query 240 GTTCGGTATCCCTTGCAAACATAGGAAACTGATACTGAAATATAGCCACAAATACAGGCT 299 ||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 313 GTTTGGTATTCCTTGCAAACATAGGAAATTGATACTGAAATATAGCCACAAATACAGGCT 372 Query 300 AGGTCTATGGAAACCTAGAGCTGATGCTATAAAGGCGTGA 339 |||||||||||||||||||||||| || |||||||||||| Sbjct 373 AGGTCTATGGAAACCTAGAGCTGACGCAATAAAGGCGTGA 412 > AT3G05810.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: IGR protein motif (InterPro:IPR019083); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26800.1); Has 62 Blast hits to 62 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:1730976-1732384 REVERSE LENGTH=685 Length=685 Score = 250 bits (135), Expect = 7e-66 Identities = 281/349 (81%), Gaps = 20/349 (6%) Strand=Plus/Plus Query 1 ATGGCGTGGATGCGACTGATACAGAGCGCGAGATCTGCTCTAAGAGCCGAAC-CAA-CGC 58 |||||||||| ||| |||| |||||||||||| | ||||| || | | | | ||| || Sbjct 64 ATGGCGTGGACACGATTGATTCAGAGCGCGAGAGCAGCTCT-AGGGAC-AGCGCAATCG- 120 Query 59 CG-TCGACTCTTAACTTCCCTAGATT---CTACTCCAAATCCGCCGCTC-CTTATCCCGT 113 | ||||||||| | |||||||||| || ||||||| | | || | ||||| ||| Sbjct 121 TGCTCGACTCTTGGCCTCCCTAGATTCCACTCCTCCAAA--C-CAGC-CACTTATTTCGT 176 Query 114 GAAAGTTGGAATTCCTGAGTTT-TTGAGTGGGATTGGAGGAGGAGTTGAGACTCATATTG 172 ||| || || ||||| |||||| | | ||||||||||| |||||| ||||||||| |||| Sbjct 177 GAAGGTAGGGATTCCAGAGTTTCTAG-GTGGGATTGGAAGAGGAGCTGAGACTCACATTG 235 Query 173 CTAAACTTGAAACCGAG-TTAGGCGATCTTCCGAAGCTGCTCGTGACTCGTACGCTTAGA 231 | ||| ||||||| ||| || || || |||| ||||| || ||||| ||||| || ||| Sbjct 236 CCAAAATTGAAACTGAGATT-GGTGACCTTCATAAGCTTCTTGTGACGCGTACTCTCAGA 294 Query 232 CTCAAG-AAGTTCGGTATCCCTTGCAAACATAGGAAACTGATACTGAAATATAGCCACAA 290 |||||| || || || || ||||||||||||||||||||||||||||| ||| |||| || Sbjct 295 CTCAAGAAACTT-GGCATTCCTTGCAAACATAGGAAACTGATACTGAAGTATGGCCAGAA 353 Query 291 ATACAGGCTAGGTCTATGGAAACCTAGAGCTGATGCTATAAAGGCGTGA 339 ||||||| |||| |||||||||||||||||||| ||||| ||||| ||| Sbjct 354 ATACAGGTTAGGGCTATGGAAACCTAGAGCTGACGCTATTAAGGCCTGA 402 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15834340935 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5