BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg326933

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G27720.1 | Symbols: emb1644 | Small nuclear ribonucleoprotei...   592    1e-168


> AT5G27720.1 | Symbols: emb1644 | Small nuclear ribonucleoprotein 
family protein | chr5:9815556-9817599 FORWARD LENGTH=912
Length=912

 Score =  592 bits (320),  Expect = 1e-168
 Identities = 352/368 (96%), Gaps = 0/368 (0%)
 Strand=Plus/Plus

Query  1    ATGCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGTCATCCTATGCTCGTGGAGCTCAAG  60
            ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct  228  ATGCTTCCTCTATCGCTGCTTAAAACTGCTCAAGGGCATCCTATGCTCGTGGAGCTTAAG  287

Query  61   AATGGAGAGACATACAATGGGCATTTGGTGAATTGTGATACTTGGATGAACATTCATCTT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct  288  AATGGAGAGACATACAATGGGCATTTGGTGAATTGTGATACTTGGATGAACATCCATCTG  347

Query  121  CGTGAAGTCATCTGTACATCAAAGGACGGAGATAGGTTTTGGAGAATGCCGGAATGTTAT  180
            ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  348  CGTGAAGTCATATGTACATCAAAGGACGGAGATAGATTTTGGAGGATGCCGGAATGTTAT  407

Query  181  ATCCGTGGTAACACAATCAAATACCTTCGAGTTCCAGATGAGGTGATTGATAAAGTACAG  240
            |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct  408  ATCCGTGGTAACACAATCAAGTACCTTCGAGTTCCGGATGAGGTGATTGATAAAGTACAG  467

Query  241  GAGGAGAAGAGTCGCACAGATAGAAAACCACCAGGGGTTGGACGGGGAAGAGGACGTGGT  300
            ||||||||||  ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct  468  GAGGAGAAGACACGCACAGATAGAAAACCACCAGGTGTTGGACGTGGAAGAGGACGTGGT  527

Query  301  GTGGATGATGGAGGGGCCAGAGGCAGAGGCCGAGGAACTTCAATGGGTAAGATGGGTGGC  360
            |||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct  528  GTGGATGATGGAGGAGCCAGAGGCAGAGGCAGAGGAACTTCAATGGGGAAGATGGGTGGC  587

Query  361  AACAGAGG  368
            ||||||||
Sbjct  588  AACAGAGG  595



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5