BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326950
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27530.1 | Symbols: | Pectin lyase-like superfamily protein... 1559 0.0
AT5G44840.1 | Symbols: | Pectin lyase-like superfamily protein... 172 6e-42
> AT5G27530.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:9717503-9721097 FORWARD LENGTH=1377
Length=1377
Score = 1559 bits (844), Expect = 0.0
Identities = 1113/1241 (90%), Gaps = 25/1241 (2%)
Strand=Plus/Plus
Query 1 ATGGTTACAGTCCAAAAGAAAC-GCAATAGACCCGTCATTCGTCCGCGTTACCACTCAAT 59
||||||||| |||||||| ||| | ||| ||||| ||||||||||||||||||||||||
Sbjct 10 ATGGTTACAATCCAAAAG-AACGGTGATATACCCG-CATTCGTCCGCGTTACCACTCAAT 67
Query 60 AGG-ATGGTCTC--G--------TGAAACCATACTACGTATATCAATATTGATAAATTTT 108
|| |||||||| | ||||||||||||||||||||| |||||||||||||||
Sbjct 68 -GGCATGGTCTCATGTCATTTCCTGAAACCATACTACGTATATCCATATTGATAAATTTT 126
Query 109 ATCTATTTTGGTCTTGTAAACGGCCAAAACTACAATGTACTCAAATTTGGTGCTAAAGGA 168
|||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 127 ATCTGTTTTGGTCTTGTAAACGGCCAAATTTACAATGTACTCAAATTTGGTGCTGAAGGA 186
Query 169 GATGGTGAAACCGATGATTCAAATGCTTTTATACAAGCATGGAACGCTACATGTGGTGGA 228
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 187 GATGGTCAAACCGATGATTCAAATGCTTTTTTACAAGCATGGAACGCTACATGTGGTGGA 246
Query 229 GAAGATAACATAAATACACTTCTTATTCCCTCTGGAAAAACATATTTGCTTCAACCTATT 288
||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 247 GAAGAAAACATAAATACACTTTTTATTCCCTCTGGAAAAACATATTTACTTCAACCTATT 306
Query 289 GAGTTCAAAGGCCCTTGTAAATCTACGTCCATAAAAATTCAGTTGGATGGTATCATTGTC 348
||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 307 GAGTTCAAAGGTCCTTGTAAATCTACCTCCATAAAACTTCAGTTGGATGGTATCATTGTC 366
Query 349 GCACCTAGCAACATCAAAACATGGTCCAACCCCAAATCTCAAATGTGGATTAGTTTTTCA 408
|||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||
Sbjct 367 GCACCTAGCAACATCACATCATGGTCCAACCCCAAATCTCAAACGTGGATTAGTTTTTCA 426
Query 409 TCTGTATTTAGTCTAATGATCGATGGTTCTGGAAAGATTGATGGTCGCGGTTCTTCCTTT 468
||| | |||||||||| |||||||| |||| ||| ||||||| ||||||||||||
Sbjct 427 GGTGTGCCTGGTCTAATGATTGATGGTTCAGGAACGATAAATGGTCGTGGTTCTTCCTTT 486
Query 469 TGGGAGGCACTACATATTTACAAATGTGATAATCTTACAATAAACGGGATAACTTCGATT 528
||||||||||||||||| | ||| ||| ||||||| || |||||||||||||||||||||
Sbjct 487 TGGGAGGCACTACATATATGCAATTGTAATAATCTCACGATAAACGGGATAACTTCGATT 546
Query 529 GATAGTCCAAAAACTCATATATCAATCAAAGGA-TGTAATTATGCTACAATATCGAAAAT 587
||||||||||||| |||||||||||||||| | || |||||| | |||||||||||||
Sbjct 547 GATAGTCCAAAAAGTCATATATCAATCAAA-AATTGCCATTATGTTGCAATATCGAAAAT 605
Query 588 AAATATTTTGGCACCTGAGAAAAGTCCCAACACAGATGGGATTGATATAAGTTACTCGAC 647
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 606 AAATATTTTGGCACCTGAGAATAGTCCCAACACAGATGGTATTGATATAAGTTACTCGAC 665
Query 648 TAATATCAAAATATCCGACTCTACAATTCAAACTGGGGATGATTGCATAGCAATCGACAA 707
||| |||| |||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 666 GAATGTCAATATATTTGACTCTACAATTCAAACTGGAGATGATTGCATAGCAATCAACAC 725
Query 708 TGGAAGTTCTGGTATTAACATCACACAAATTAATTGTGGACCTGGTCATGGAATAAGTGT 767
||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||||
Sbjct 726 TGGAAGTTCCAGTATCAACATCACACAAGTGAATTGTGGACCTGGTCATGGAATAAGTGT 785
Query 768 AGGAAGTCTAGGAGCTGATGGA-ACAAATGCCGAAGTTAGTGATGTTCATGTGACTCATT 826
|||||||| |||||||||||| | |||||| | ||||||||||||| | |||||||| |
Sbjct 786 GGGAAGTCTTGGAGCTGATGGAGA-AAATGCAGCAGTTAGTGATGTTTACGTGACTCAGT 844
Query 827 GTACTTTTAATGAAACGATGAATGGAGCTAGAATTAAGACATGGCAGGGTGGACAAGGTT 886
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 845 GTACTTTTAATAAAACGACGAATGGAGCTAGAATTAAGACATGGCAGGGTGGACAAGGTT 904
Query 887 ATGCAAGAAACATAAGTTTTGAGAATATCACACTCATTAAC--ACAAGAAATCCAATTAT 944
||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||
Sbjct 905 ATGCAAGAAACATAAGTTTTGAGAATATCACACTCATTAACGTACAA-AA-TCCAATTAT 962
Query 945 CATTGACCAACAATATATTGATAAAGGACATATTGATGCCACTAAGGATTCAGCAGTGGC 1004
|||||||||||||||| |||||||| || | |||||||||||||||||||||| |||||
Sbjct 963 AATTGACCAACAATATACTGATAAAGTACTTCTTGATGCCACTAAGGATTCAGCGGTGGC 1022
Query 1005 AATTGGCAATGTGAAATATATTGGTTTTCGTGGAACCACAGTGAATGA-GTATGCTATAA 1063
|||| ||| ||| |||||| ||||||||| ||||| ||| | || || | |||||||||
Sbjct 1023 AATTAGCAGTGTAAAATATGTTGGTTTTCAAGGAACAACACTTAACGAAG-ATGCTATAA 1081
Query 1064 CACTTAATTGTAGTGCCATCACACATTGTAAAGACGTTGTCATGGATGATATTCAAGTTA 1123
||||| ||||||||||||||| ||||||||||| | ||||| ||||||||| ||||||
Sbjct 1082 TGCTTAAATGTAGTGCCATCACATATTGTAAAGACATGGTCATAGATGATATTGAAGTTA 1141
Query 1124 CAATGGAAAATGGAGAAAAAGCTAAAGCTGAATGTCAAAATGTTGAAGGAGAATCTAGTG 1183
| |||||||||||||||||| |||||| ||||||| ||||||||||||||||||| ||||
Sbjct 1142 CCATGGAAAATGGAGAAAAACCTAAAGTTGAATGTGAAAATGTTGAAGGAGAATCCAGTG 1201
Query 1184 ATAGTGATTTGATGCGCGACTGCTTTAAAAATAGTAGTACT 1224
| | ||||||||||||||| |||||||| | || |||||||
Sbjct 1202 ACAATGATTTGATGCGCGAGTGCTTTAATAGTAATAGTACT 1242
> AT5G44840.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:18104851-18107127 REVERSE LENGTH=1146
Length=1146
Score = 172 bits (93), Expect = 6e-42
Identities = 637/889 (72%), Gaps = 80/889 (9%)
Strand=Plus/Plus
Query 120 TCTTGTAAACGGCCAAAACTACAATGTACTCAAATTTGGTGCTAAAGGAGATGGTGA-AA 178
||||||||||||||||| ||| |||| || |||||||||| | ||| ||||| | |
Sbjct 51 TCTTGTAAACGGCCAAATCTATGATGTGCTTGAATTTGGTGCCGATGGAAATGGT-ATTA 109
Query 179 CCGATGATTCAAATGCTTTTAT-ACAAGCATGGAACGCTACATGTGGTGGAGAAGATAAC 237
||||||||||||| |||||| | | ||||||||| ||||| |||||| | | | ||
Sbjct 110 CCGATGATTCAAAGGCTTTTGTGA-AAGCATGGAGCGCTATGTGTGGTAGTGGTGGGAA- 167
Query 238 AT-AAATACACTTC-TTATTCCCTCTGGA-AAAACATATTTGCTTCAACCTATTGA-GTT 293
| ||| ||| ||| ||||||| || | ||||||| ||| || |||||| || | ||
Sbjct 168 TTCAAAAACA-TTCATTATTCCATC-AAACAAAACATTTTTACTACAACCTCTT-ACTTT 224
Query 294 CAAAGGCCCTTGTAAATCTACGTCCATAAAAATTCAGTTGGATGGTATCATTGTCGCACC 353
| ||||||||||||||||| | ||| || || || |||| || || | ||||| |||||
Sbjct 225 CCAAGGCCCTTGTAAATCTCCTTCCGTACAAGTTAAGTTTGACGGAAAGATTGTTGCACC 284
Query 354 TAGCAACATCAAA--A-CATGGTCCAACCCCAA---ATCTCAAATGTGGATTAGTTTTTC 407
|| || || ||| | | ||||| || || || | | ||| || |||| ||||
Sbjct 285 TA-TAA-AT-AAAGCAGCTTGGTCGGACTATAAGTTAT-TTAGATG-GG-TTAG-TTTTA 337
Query 408 A-TCTGTATTTAGTCTAATGA-TCGATGGTTCTGGAA-AGATTGATGGTCGCGGTTCTTC 464
| || | || ||| | || ||||||| |||| | ||| |||| || || || |
Sbjct 338 AGGAAATAATCGGTTTAA-CAGTCAATGGTTCGGGAACA-ATTCATGGACGTGGCTCGT- 394
Query 465 CTTTTGGGAGGC-ACTACATATTTAC-AA-ATGTGATAATCTTACAATAAAC-GGGATAA 520
||||| ||| || | | ||| ||| | || ||| | |||| | || ||| || ||||
Sbjct 395 CTTTTTGGAAGCAATTGCAT-TTT-CAAAGATGCAACGATCTCATGAT-AACTGGAATAA 451
Query 521 CTTCGATT-GATAGTCC-AAAAACTCATATATCAATCAAAGGATG-TAATTATGCTACAA 577
| || ||| | ||||| |||||| |||||||| || | | ||| || | | || ||
Sbjct 452 CCTC-ATTCAACAGTCCAAAAAAC-CATATATCGATTAGCGAATGCAAAAGA-GTTAAAA 508
Query 578 TATCGAAAATAAATA-TTTTGGCACCTGA-GAAAAGTCCCAACACAGATGGGATTGATA- 634
|| |||| ||||| | | | ||||| | | | ||||| ||||| ||||| ||| |||
Sbjct 509 TAACGAAGATAAA-ACTCGTAGCACCCCACG-ATAGTCCTAACACTGATGGAATTAATAT 566
Query 635 -TAAGTTACTCGACTAATATCAAAATATCCGACTCTA-CAATTCAAACTGGGGATGATTG 692
| || | || | | || || | |||| |||| | | ||| |||||| ||||||||
Sbjct 567 CTCAG--AATCAAGTGATGTCGATATATACGACAC-AGTTATTGGAACTGGAGATGATTG 623
Query 693 CATAGCAATCGACAATGGAAGTTCTG-GTATTAACATCACACA-AATTAATTGTGGACCT 750
|||| || ||| ||||| | || ||| || ||| || | || ||||||||||||
Sbjct 624 TGTAGCTATTAACAGCGGAAG-TATGAATATCAATATCGCA-AGGATGAATTGTGGACCT 681
Query 751 GGTCATGGAATAAGTGTAGGAAGTCTAGGA-GCTGATGGA-ACA-AATGCCGA-AGTTAG 806
||||||||||||||||| |||||| ||||| | |||||| | | ||| | | |||| |
Sbjct 682 GGTCATGGAATAAGTGTGGGAAGTGTAGGAAGA-GATGGAGA-AGAAT-CT-ATAGTT-G 736
Query 807 TGA-TGTTCATGTGACTCATTGTACTTTTAAT-GAAACG-ATGAATGGAGCTAGAATTAA 863
|| ||| || || ||| |||| ||||| | | | | || || |||||||||||||||||
Sbjct 737 AGAATGTCCAAGTAACTAATTGCACTTTCATTAGGA-CGGAT-AATGGAGCTAGAATTAA 794
Query 864 GACATGGCAGGGTGGACAAGGT-TATGCAAGAAACATAAGTTTTGAGAATATCACACTCA 922
|||||||| | |||| |||| || |||| ||| ||| |||| ||| | | ||| | |
Sbjct 795 GACATGGCCGAATGGA-AAGGGATACGCAAAAAATATACTTTTTAAGAGTCTTACATTTA 853
Query 923 TT-AACAC-AAGAAATCCAATTATCATTGACCAACAAT-ATATTGATAA 968
|| || || |||||| || || || |||||| ||| || |||||||
Sbjct 854 GAGAA-ACCAA-AAATCCGATAATAATCGACCAA-AATTATGTTGATAA 899
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5