BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg326950 Length=1230 Score E Sequences producing significant alignments: (Bits) Value AT5G27530.1 | Symbols: | Pectin lyase-like superfamily protein... 1559 0.0 AT5G44840.1 | Symbols: | Pectin lyase-like superfamily protein... 172 6e-42 > AT5G27530.1 | Symbols: | Pectin lyase-like superfamily protein | chr5:9717503-9721097 FORWARD LENGTH=1377 Length=1377 Score = 1559 bits (844), Expect = 0.0 Identities = 1113/1241 (90%), Gaps = 25/1241 (2%) Strand=Plus/Plus Query 1 ATGGTTACAGTCCAAAAGAAAC-GCAATAGACCCGTCATTCGTCCGCGTTACCACTCAAT 59 ||||||||| |||||||| ||| | ||| ||||| |||||||||||||||||||||||| Sbjct 10 ATGGTTACAATCCAAAAG-AACGGTGATATACCCG-CATTCGTCCGCGTTACCACTCAAT 67 Query 60 AGG-ATGGTCTC--G--------TGAAACCATACTACGTATATCAATATTGATAAATTTT 108 || |||||||| | ||||||||||||||||||||| ||||||||||||||| Sbjct 68 -GGCATGGTCTCATGTCATTTCCTGAAACCATACTACGTATATCCATATTGATAAATTTT 126 Query 109 ATCTATTTTGGTCTTGTAAACGGCCAAAACTACAATGTACTCAAATTTGGTGCTAAAGGA 168 |||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 127 ATCTGTTTTGGTCTTGTAAACGGCCAAATTTACAATGTACTCAAATTTGGTGCTGAAGGA 186 Query 169 GATGGTGAAACCGATGATTCAAATGCTTTTATACAAGCATGGAACGCTACATGTGGTGGA 228 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 187 GATGGTCAAACCGATGATTCAAATGCTTTTTTACAAGCATGGAACGCTACATGTGGTGGA 246 Query 229 GAAGATAACATAAATACACTTCTTATTCCCTCTGGAAAAACATATTTGCTTCAACCTATT 288 ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 247 GAAGAAAACATAAATACACTTTTTATTCCCTCTGGAAAAACATATTTACTTCAACCTATT 306 Query 289 GAGTTCAAAGGCCCTTGTAAATCTACGTCCATAAAAATTCAGTTGGATGGTATCATTGTC 348 ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| Sbjct 307 GAGTTCAAAGGTCCTTGTAAATCTACCTCCATAAAACTTCAGTTGGATGGTATCATTGTC 366 Query 349 GCACCTAGCAACATCAAAACATGGTCCAACCCCAAATCTCAAATGTGGATTAGTTTTTCA 408 |||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| Sbjct 367 GCACCTAGCAACATCACATCATGGTCCAACCCCAAATCTCAAACGTGGATTAGTTTTTCA 426 Query 409 TCTGTATTTAGTCTAATGATCGATGGTTCTGGAAAGATTGATGGTCGCGGTTCTTCCTTT 468 ||| | |||||||||| |||||||| |||| ||| ||||||| |||||||||||| Sbjct 427 GGTGTGCCTGGTCTAATGATTGATGGTTCAGGAACGATAAATGGTCGTGGTTCTTCCTTT 486 Query 469 TGGGAGGCACTACATATTTACAAATGTGATAATCTTACAATAAACGGGATAACTTCGATT 528 ||||||||||||||||| | ||| ||| ||||||| || ||||||||||||||||||||| Sbjct 487 TGGGAGGCACTACATATATGCAATTGTAATAATCTCACGATAAACGGGATAACTTCGATT 546 Query 529 GATAGTCCAAAAACTCATATATCAATCAAAGGA-TGTAATTATGCTACAATATCGAAAAT 587 ||||||||||||| |||||||||||||||| | || |||||| | ||||||||||||| Sbjct 547 GATAGTCCAAAAAGTCATATATCAATCAAA-AATTGCCATTATGTTGCAATATCGAAAAT 605 Query 588 AAATATTTTGGCACCTGAGAAAAGTCCCAACACAGATGGGATTGATATAAGTTACTCGAC 647 ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 606 AAATATTTTGGCACCTGAGAATAGTCCCAACACAGATGGTATTGATATAAGTTACTCGAC 665 Query 648 TAATATCAAAATATCCGACTCTACAATTCAAACTGGGGATGATTGCATAGCAATCGACAA 707 ||| |||| |||| |||||||||||||||||||| |||||||||||||||||| ||| Sbjct 666 GAATGTCAATATATTTGACTCTACAATTCAAACTGGAGATGATTGCATAGCAATCAACAC 725 Query 708 TGGAAGTTCTGGTATTAACATCACACAAATTAATTGTGGACCTGGTCATGGAATAAGTGT 767 ||||||||| |||| |||||||||||| | ||||||||||||||||||||||||||||| Sbjct 726 TGGAAGTTCCAGTATCAACATCACACAAGTGAATTGTGGACCTGGTCATGGAATAAGTGT 785 Query 768 AGGAAGTCTAGGAGCTGATGGA-ACAAATGCCGAAGTTAGTGATGTTCATGTGACTCATT 826 |||||||| |||||||||||| | |||||| | ||||||||||||| | |||||||| | Sbjct 786 GGGAAGTCTTGGAGCTGATGGAGA-AAATGCAGCAGTTAGTGATGTTTACGTGACTCAGT 844 Query 827 GTACTTTTAATGAAACGATGAATGGAGCTAGAATTAAGACATGGCAGGGTGGACAAGGTT 886 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 845 GTACTTTTAATAAAACGACGAATGGAGCTAGAATTAAGACATGGCAGGGTGGACAAGGTT 904 Query 887 ATGCAAGAAACATAAGTTTTGAGAATATCACACTCATTAAC--ACAAGAAATCCAATTAT 944 ||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||| Sbjct 905 ATGCAAGAAACATAAGTTTTGAGAATATCACACTCATTAACGTACAA-AA-TCCAATTAT 962 Query 945 CATTGACCAACAATATATTGATAAAGGACATATTGATGCCACTAAGGATTCAGCAGTGGC 1004 |||||||||||||||| |||||||| || | |||||||||||||||||||||| ||||| Sbjct 963 AATTGACCAACAATATACTGATAAAGTACTTCTTGATGCCACTAAGGATTCAGCGGTGGC 1022 Query 1005 AATTGGCAATGTGAAATATATTGGTTTTCGTGGAACCACAGTGAATGA-GTATGCTATAA 1063 |||| ||| ||| |||||| ||||||||| ||||| ||| | || || | ||||||||| Sbjct 1023 AATTAGCAGTGTAAAATATGTTGGTTTTCAAGGAACAACACTTAACGAAG-ATGCTATAA 1081 Query 1064 CACTTAATTGTAGTGCCATCACACATTGTAAAGACGTTGTCATGGATGATATTCAAGTTA 1123 ||||| ||||||||||||||| ||||||||||| | ||||| ||||||||| |||||| Sbjct 1082 TGCTTAAATGTAGTGCCATCACATATTGTAAAGACATGGTCATAGATGATATTGAAGTTA 1141 Query 1124 CAATGGAAAATGGAGAAAAAGCTAAAGCTGAATGTCAAAATGTTGAAGGAGAATCTAGTG 1183 | |||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |||| Sbjct 1142 CCATGGAAAATGGAGAAAAACCTAAAGTTGAATGTGAAAATGTTGAAGGAGAATCCAGTG 1201 Query 1184 ATAGTGATTTGATGCGCGACTGCTTTAAAAATAGTAGTACT 1224 | | ||||||||||||||| |||||||| | || ||||||| Sbjct 1202 ACAATGATTTGATGCGCGAGTGCTTTAATAGTAATAGTACT 1242 > AT5G44840.1 | Symbols: | Pectin lyase-like superfamily protein | chr5:18104851-18107127 REVERSE LENGTH=1146 Length=1146 Score = 172 bits (93), Expect = 6e-42 Identities = 637/889 (72%), Gaps = 80/889 (9%) Strand=Plus/Plus Query 120 TCTTGTAAACGGCCAAAACTACAATGTACTCAAATTTGGTGCTAAAGGAGATGGTGA-AA 178 ||||||||||||||||| ||| |||| || |||||||||| | ||| ||||| | | Sbjct 51 TCTTGTAAACGGCCAAATCTATGATGTGCTTGAATTTGGTGCCGATGGAAATGGT-ATTA 109 Query 179 CCGATGATTCAAATGCTTTTAT-ACAAGCATGGAACGCTACATGTGGTGGAGAAGATAAC 237 ||||||||||||| |||||| | | ||||||||| ||||| |||||| | | | || Sbjct 110 CCGATGATTCAAAGGCTTTTGTGA-AAGCATGGAGCGCTATGTGTGGTAGTGGTGGGAA- 167 Query 238 AT-AAATACACTTC-TTATTCCCTCTGGA-AAAACATATTTGCTTCAACCTATTGA-GTT 293 | ||| ||| ||| ||||||| || | ||||||| ||| || |||||| || | || Sbjct 168 TTCAAAAACA-TTCATTATTCCATC-AAACAAAACATTTTTACTACAACCTCTT-ACTTT 224 Query 294 CAAAGGCCCTTGTAAATCTACGTCCATAAAAATTCAGTTGGATGGTATCATTGTCGCACC 353 | ||||||||||||||||| | ||| || || || |||| || || | ||||| ||||| Sbjct 225 CCAAGGCCCTTGTAAATCTCCTTCCGTACAAGTTAAGTTTGACGGAAAGATTGTTGCACC 284 Query 354 TAGCAACATCAAA--A-CATGGTCCAACCCCAA---ATCTCAAATGTGGATTAGTTTTTC 407 || || || ||| | | ||||| || || || | | ||| || |||| |||| Sbjct 285 TA-TAA-AT-AAAGCAGCTTGGTCGGACTATAAGTTAT-TTAGATG-GG-TTAG-TTTTA 337 Query 408 A-TCTGTATTTAGTCTAATGA-TCGATGGTTCTGGAA-AGATTGATGGTCGCGGTTCTTC 464 | || | || ||| | || ||||||| |||| | ||| |||| || || || | Sbjct 338 AGGAAATAATCGGTTTAA-CAGTCAATGGTTCGGGAACA-ATTCATGGACGTGGCTCGT- 394 Query 465 CTTTTGGGAGGC-ACTACATATTTAC-AA-ATGTGATAATCTTACAATAAAC-GGGATAA 520 ||||| ||| || | | ||| ||| | || ||| | |||| | || ||| || |||| Sbjct 395 CTTTTTGGAAGCAATTGCAT-TTT-CAAAGATGCAACGATCTCATGAT-AACTGGAATAA 451 Query 521 CTTCGATT-GATAGTCC-AAAAACTCATATATCAATCAAAGGATG-TAATTATGCTACAA 577 | || ||| | ||||| |||||| |||||||| || | | ||| || | | || || Sbjct 452 CCTC-ATTCAACAGTCCAAAAAAC-CATATATCGATTAGCGAATGCAAAAGA-GTTAAAA 508 Query 578 TATCGAAAATAAATA-TTTTGGCACCTGA-GAAAAGTCCCAACACAGATGGGATTGATA- 634 || |||| ||||| | | | ||||| | | | ||||| ||||| ||||| ||| ||| Sbjct 509 TAACGAAGATAAA-ACTCGTAGCACCCCACG-ATAGTCCTAACACTGATGGAATTAATAT 566 Query 635 -TAAGTTACTCGACTAATATCAAAATATCCGACTCTA-CAATTCAAACTGGGGATGATTG 692 | || | || | | || || | |||| |||| | | ||| |||||| |||||||| Sbjct 567 CTCAG--AATCAAGTGATGTCGATATATACGACAC-AGTTATTGGAACTGGAGATGATTG 623 Query 693 CATAGCAATCGACAATGGAAGTTCTG-GTATTAACATCACACA-AATTAATTGTGGACCT 750 |||| || ||| ||||| | || ||| || ||| || | || |||||||||||| Sbjct 624 TGTAGCTATTAACAGCGGAAG-TATGAATATCAATATCGCA-AGGATGAATTGTGGACCT 681 Query 751 GGTCATGGAATAAGTGTAGGAAGTCTAGGA-GCTGATGGA-ACA-AATGCCGA-AGTTAG 806 ||||||||||||||||| |||||| ||||| | |||||| | | ||| | | |||| | Sbjct 682 GGTCATGGAATAAGTGTGGGAAGTGTAGGAAGA-GATGGAGA-AGAAT-CT-ATAGTT-G 736 Query 807 TGA-TGTTCATGTGACTCATTGTACTTTTAAT-GAAACG-ATGAATGGAGCTAGAATTAA 863 || ||| || || ||| |||| ||||| | | | | || || ||||||||||||||||| Sbjct 737 AGAATGTCCAAGTAACTAATTGCACTTTCATTAGGA-CGGAT-AATGGAGCTAGAATTAA 794 Query 864 GACATGGCAGGGTGGACAAGGT-TATGCAAGAAACATAAGTTTTGAGAATATCACACTCA 922 |||||||| | |||| |||| || |||| ||| ||| |||| ||| | | ||| | | Sbjct 795 GACATGGCCGAATGGA-AAGGGATACGCAAAAAATATACTTTTTAAGAGTCTTACATTTA 853 Query 923 TT-AACAC-AAGAAATCCAATTATCATTGACCAACAAT-ATATTGATAA 968 || || || |||||| || || || |||||| ||| || ||||||| Sbjct 854 GAGAA-ACCAA-AAATCCGATAATAATCGACCAA-AATTATGTTGATAA 899 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60441456180 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5