BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326953
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27495.1 | Symbols: | Defensin-like (DEFL) family protein |... 250 4e-66
AT2G12465.1 | Symbols: LCR50 | low-molecular-weight cysteine-ri... 104 4e-22
AT1G58055.1 | Symbols: | Defensin-like (DEFL) family protein |... 80.5 6e-15
> AT5G27495.1 | Symbols: | Defensin-like (DEFL) family protein
| chr5:9706374-9706720 FORWARD LENGTH=246
Length=246
Score = 250 bits (135), Expect = 4e-66
Identities = 212/247 (86%), Gaps = 14/247 (6%)
Strand=Plus/Plus
Query 1 ATGACTACTAGCAAGAAAATGTTGATCGTATTTGTCCTTACTATCCTCTTTGTCATATCT 60
||||||| ||||||||||||||| ||||| |||||||| |||||| || ||| |||||
Sbjct 4 ATGACTATTAGCAAGAAAATGTTAATCGTGTTTGTCCTGACTATCTTCGTTG---TATCT 60
Query 61 TCTGTTCATTGCTCTGATAGCACTCTTGGTCTT-GGA--ATA-AAG-AAG-----AAACA 110
| || ||||||||||||||| || |||| || ||| | | ||| ||| |||||
Sbjct 61 TTTGGTCATTGCTCTGATAGTTTTCCTGGT-TTAGGATTAAAGAAGCAAGCACATAAACA 119
Query 111 ATGCTACAGTCCAGATCTGTGTAAGGGAGGGGACGGCGAATGTGATATATGTTGTGTTCT 170
||||||||||||||| ||||||| |||||| ||| || ||||||||||||||||||||||
Sbjct 120 ATGCTACAGTCCAGACCTGTGTACGGGAGGAGACAGCAAATGTGATATATGTTGTGTTCT 179
Query 171 TACAAGTGGTGTATACTACGGTAAATGTATTCAAAGCAAATGTCATTGTTTGATTAAGAC 230
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 TATAAGTGGTGTATACTACGGTAAATGTATTCAAAGCAAATGTCATTGTTTGAATAAGAC 239
Query 231 TGAATAA 237
| |||||
Sbjct 240 TAAATAA 246
> AT2G12465.1 | Symbols: LCR50 | low-molecular-weight cysteine-rich
50 | chr2:5055525-5055872 REVERSE LENGTH=252
Length=252
Score = 104 bits (56), Expect = 4e-22
Identities = 144/184 (78%), Gaps = 15/184 (8%)
Strand=Plus/Plus
Query 30 ATTTGTCCTTACTATCCTCTTTGTCATATCTTCTGTTCATTGCTCTGAT-AGCACTCTTG 88
|||||| || |||||||||||||||||||||||||||||||| |||||| | || | |
Sbjct 30 ATTTGTTCTCACTATCCTCTTTGTCATATCTTCTGTTCATTGTTCTGATGAT-ACCCAAG 88
Query 89 GTCTTGGAATAAAG-AAGA--A-A--CAATGCTACAGTCCAGATC--TGT-GTAAGGGAG 139
|| ||||||||||| |||| | | ||||| || | ||||||| ||| |||||||||
Sbjct 89 GTTTTGGAATAAAGCAAGAGTATAAACAATGTTATACACCAGATCCATGTCGTAAGGGAG 148
Query 140 GGGACGGCGAATGTGATATATGTTGTGTT-CTTACAAGTGGTGTA-TACTACGGTAAATG 197
| | | |||||| || | | |||||| || | ||| ||| || || |||||||||||
Sbjct 149 GTAATGACGAATGCGAGAGGTTTTGTGTAGCTAA-AAGCGGTTTACTA-TACGGTAAATG 206
Query 198 TATT 201
||||
Sbjct 207 TATT 210
> AT1G58055.1 | Symbols: | Defensin-like (DEFL) family protein
| chr1:21488741-21489132 FORWARD LENGTH=308
Length=308
Score = 80.5 bits (43), Expect = 6e-15
Identities = 83/102 (81%), Gaps = 4/102 (4%)
Strand=Plus/Plus
Query 1 ATGACTACTAGCAAGAAAATGTTGA-TCGTATTTGTCCTTACTATCCTCTTTGTCATATC 59
|||||||| | ||||| |||||| | | | |||||| || ||| | |||||||||||||
Sbjct 1 ATGACTACCACCAAGACAATGTT-AGTTGCATTTGTTCTCACTTTGTTCTTTGTCATATC 59
Query 60 TTCTGTTCATTGCTCTGATAGCACTCTTGGTCT-TGGAATAA 100
||||||||||||||| ||| ||||| |||| | ||| ||||
Sbjct 60 TTCTGTTCATTGCTCCGATGGCACTAGTGGT-TATGGCATAA 100
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10707030537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5