BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326972
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49120.1 | Symbols: ATPERX34, PERX34, PRXCB, ATPCB, PRX34 | ... 1330 0.0
AT3G49110.1 | Symbols: PRX33, PRXCA, ATPRX33, ATPCA | peroxidas... 1229 0.0
> AT3G49120.1 | Symbols: ATPERX34, PERX34, PRXCB, ATPCB, PRX34
| peroxidase CB | chr3:18207651-18210132 FORWARD LENGTH=1321
Length=1321
Score = 1330 bits (720), Expect = 0.0
Identities = 947/1058 (90%), Gaps = 10/1058 (1%)
Strand=Plus/Plus
Query 16 TCTTCTTCTTCTACTTCACT-CACTTGGACAACCTTAATCACATTGGGATGTCTTATGCT 74
||||| ||||| || || | ||||||||||| |||||||||||||||||||||||||||
Sbjct 178 TCTTCGTCTTCAACATC-GTCCACTTGGACAATCTTAATCACATTGGGATGTCTTATGCT 236
Query 75 AT-ATGCCTCTTTGTCCGATGCTCAACTTACCCCTACCTTCTACGACAATTCATGTCCTA 133
| |||| |||||||||| ||||||||| ||||||||||||||||| | ||||||||||
Sbjct 237 -TCATGCATCTTTGTCCGCTGCTCAACTCACCCCTACCTTCTACGATAGGTCATGTCCTA 295
Query 134 ATGTTACTAACATCGTACGAGATACCATTGTCAACGAGTTAAGGTCAGACCCTCGTATCG 193
|||| ||||||||||||||||| |||||||| || ||||||||||| |||||||||||||
Sbjct 296 ATGTCACTAACATCGTACGAGAAACCATTGTAAATGAGTTAAGGTCGGACCCTCGTATCG 355
Query 194 CCGCGAGCATCCTCCGTCTTCATTTCCACGACTGCTTTGTAAATGGTTGTGACGCATCGA 253
| ||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 356 CTGCGAGCATCCTTCGTCTTCACTTCCACGACTGCTTTGTTAATGGTTGTGACGCATCCA 415
Query 254 TCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGCATTTGGAAACGCAAATT 313
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 416 TCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGCGTTTGGAAACGCAAATT 475
Query 314 CGGCTCGGGGATTTCCCGTGATTGATAGAATGAAAGCCGCAATAGAGACGGCTTGCCCAA 373
|||||||||||||||| |||||||||||||||||||| || | |||| ||| |||||||
Sbjct 476 CGGCTCGGGGATTTCCAGTGATTGATAGAATGAAAGCTGCGGTGGAGAGGGCATGCCCAA 535
Query 374 GAACCGTTTCATGCGCAGATATGCTTACCATCGCGGCTCAACAATCTGTTACTTTGGCGG 433
||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||| |
Sbjct 536 GAACCGTTTCATGCGCAGATATGCTCACCATTGCAGCTCAACAATCTGTCACTTTGGCAG 595
Query 434 GAGGTCCTTCTTGGAGAGTTCCTTTGGGGAGAAGAGACAGCTTACAAGCATTTTTGCAAC 493
|||||||||||||||| ||||||||||| || |||||||| ||||||||||| || |||
Sbjct 596 GAGGTCCTTCTTGGAGGGTTCCTTTGGGAAGGAGAGACAGTTTACAAGCATTCCTGGAAC 655
Query 494 TCGCTAATGCAAATCTTCCTGGTCCAT-CATCCACACTTCCACAACTTAAAGATAGATTT 552
||||||||||||||||||| | ||||| | | ||||||||||||||||||| || ||
Sbjct 656 TCGCTAATGCAAATCTTCCAGCTCCATTCTTT-ACACTTCCACAACTTAAAGCCAGCTTC 714
Query 553 AGAAATGTTGGCCTCAACCGTCCTTCTGATCTCGTTGCTCTTTCCGGTGGCCACACATTT 612
||||||||||| ||| | ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 715 AGAAATGTTGGTCTCGATCGTCCTTCTGATCTCGTTGCTCTCTCCGGTGGTCACACATTT 774
Query 613 GGTAAAAACCAATGCCGGTTTATTAT-GAACAGACTATACAACTTCAGCAACACCGGTTT 671
|||||||| ||||| | ||||||| | || |||| ||||||| ||||||||||| |||||
Sbjct 775 GGTAAAAATCAATGTCAGTTTATTCTTGA-CAGATTATACAATTTCAGCAACACAGGTTT 833
Query 672 ACCCGACCCTTCTCTCAACACTACTTACCTACAAACTCTTCGCGGGTTGTGTCCCCGTAA 731
|||||||||| | ||||||||||||||||| ||||||||||| || | || |||| |||
Sbjct 834 ACCCGACCCTACACTCAACACTACTTACCTCCAAACTCTTCGTGGACTATGCCCCCTTAA 893
Query 732 TGGTAATCTAAGTGCCTTGGTGGATTTTGATCTGCGTACGCCTACGGTTTTCGACAACAA 791
||| |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 894 TGGCAATCGAAGTGCCTTGGTAGATTTTGATCTACGTACGCCTACGGTTTTCGACAACAA 953
Query 792 ATACTATGTGAACCTTGGTGAGCGAAAAGGTCTTATCCAGAGCGACCAAGAATTGTTCTC 851
|||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 954 ATACTACGTGAATCTCAAAGAGCGAAAAGGTCTTATCCAGAGCGACCAAGAGTTGTTCTC 1013
Query 852 TAGCCCCAATGCCACGGACACAATCCCTTTGGTGAGATCATATGCTAATAGCACACAAAC 911
||||||||||||||| ||||||||||| ||||||||| |||||||| || ||||||||||
Sbjct 1014 TAGCCCCAATGCCACTGACACAATCCCCTTGGTGAGAGCATATGCTGATGGCACACAAAC 1073
Query 912 CTTCTTCAATGCGTTTGTGGAGGCAATGAATAGGATGGGAAATATCACACCT-CTCACAG 970
||||||||||| ||||||||||||||||||||||||||||| || ||||| || ||||
Sbjct 1074 ATTCTTCAATGCATTTGTGGAGGCAATGAATAGGATGGGAAACATTACACCAACT-ACAG 1132
Query 971 GAACTCAAGGACAAATCAGGTTGAATTGTAGGGTGGTGAATTCCAACTCTCTACTCCATG 1030
||||||||||||||||||| ||||| ||||| || ||||| ||||||||||| |||||||
Sbjct 1133 GAACTCAAGGACAAATCAGATTGAACTGTAGAGTTGTGAACTCCAACTCTCTGCTCCATG 1192
Query 1031 ATGTTGTTGAAATTGTTGACTTTGTTAGCTCTATGTGA 1068
|||| || || || ||||||||||||||||||||||||
Sbjct 1193 ATGTGGTGGATATCGTTGACTTTGTTAGCTCTATGTGA 1230
> AT3G49110.1 | Symbols: PRX33, PRXCA, ATPRX33, ATPCA | peroxidase
CA | chr3:18200664-18203142 FORWARD LENGTH=1365
Length=1365
Score = 1229 bits (665), Expect = 0.0
Identities = 936/1067 (88%), Gaps = 17/1067 (2%)
Strand=Plus/Plus
Query 10 TCTGCTTCTTCTTCT-TCTACTTCACTCACTTGGACAACCTTAATCACATTGGGATGTCT 68
||| |||| |||||| | |||||| ||||||||||| ||||||||| ||||||||||
Sbjct 57 TCT-CTTCATCTTCTAT-TACTTCTTTCACTTGGACAGTTTTAATCACAGTGGGATGTCT 114
Query 69 TATGCTATATGCCTCTTTGTCCGATGCTCAACTTACCCCTACCTTCTACGACAATTCATG 128
|||||| | ||| ||||| ||||||||||||||||||||||| || ||||||| ||||||
Sbjct 115 TATGCTTTGTGCGTCTTTCTCCGATGCTCAACTTACCCCTACTTTTTACGACACTTCATG 174
Query 129 TCCTAATGTTACTAACATCGTACGAGATACCATTGTCAACGAGTTAAGGTCAGACCCTCG 188
||||| || || ||||| ||| |||||||||||||||||||| |||| || ||||||||
Sbjct 175 TCCTACCGTCACCAACATTGTAAGAGATACCATTGTCAACGAGCTAAGATCGGACCCTCG 234
Query 189 TATCGCCGCGAGCATCCTCCGTCTTCATTTCCACGACTGCTTTGTAAATGGTTGTGACGC 248
|||||||| ||||||||| |||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 235 TATCGCCGGGAGCATCCTTCGTCTTCACTTCCATGACTGCTTTGTTAATGGTTGTGATGC 294
Query 249 ATCGATCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGCATTTGGAAACGC 308
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 295 TTCGATCTTGTTAGACAACACGACATCATTTCGAACAGAGAAAGATGCACTTGGAAATGC 354
Query 309 AAATTCGGCTCGGGGATTTCCCGTGATTGATAGAATGAAAGCCGCAATAGAGACGGCTTG 368
|||||| || || |||||||| |||||||||||||||||||| || | |||| ||| ||
Sbjct 355 AAATTCAGCCCGAGGATTTCCAGTGATTGATAGAATGAAAGCTGCGGTGGAGAGGGCATG 414
Query 369 CCCAAGAACCGTTTCATGCGCAGATATGCTTACCATCGCGGCTCAACAATCTGTTACTTT 428
|||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||
Sbjct 415 CCCAAGAACCGTTTCATGCGCAGATATGCTCACCATTGCTGCTCAACAATCTGTCACTTT 474
Query 429 GGCGGGAGGTCCTTCTTGGAGAG-TTCCTTTGGGGAGAAGAGACAGCTTACAAGCATTTT 487
||| |||||||||||||||| || ||||||| |||||||||||||||||||||||||||
Sbjct 475 GGCAGGAGGTCCTTCTTGGA-AGGTTCCTTTAGGGAGAAGAGACAGCTTACAAGCATTTC 533
Query 488 T-GCAACTCGCTAATGCAAATCTTCCTGGTCCAT-CATCCACACTTCCACAACTTAAAGA 545
| | | || ||||| ||||||||||| | ||||| | || ||||||||||| |||||||
Sbjct 534 TAG-ATCTTGCTAACGCAAATCTTCCAGCTCCATTCTTC-ACACTTCCACAGCTTAAAGC 591
Query 546 TAGATTT-AGAAATGTTGGCCTCAACCGTCCTTCTGATCTCGTTGCTCTTTCCGGTGGC- 603
| | || | ||||||||||||| | |||||||||||||| ||||| || ||||| |||
Sbjct 592 CA-ACTTCAAAAATGTTGGCCTCGATCGTCCTTCTGATCTTGTTGCGCTCTCCGG-GGCT 649
Query 604 CACACATTTGGTAAAAACCAATGCCGGTTTATTATGAACAGACTATACAACTTCAGCAAC 663
||||||||||||||||| ||||| || || |||||| ||||| |||||||||| ||||||
Sbjct 650 CACACATTTGGTAAAAATCAATGTCGATTCATTATGGACAGATTATACAACTTTAGCAAC 709
Query 664 ACCGGTTTACCCGACCCTTCTCTCAACACTACTTACCTACAAACTCTTCGCGGGTTG-TG 722
|| || ||||| |||||| | ||||||||||||||||| ||||||||||| || | ||
Sbjct 710 ACTGGATTACCTGACCCTACACTCAACACTACTTACCTCCAAACTCTTCGTGG-TCAATG 768
Query 723 TCCCCGTAATGGTAATCTAAGTGCCTTGGTGGATTTTGATCTGCGTACGCCTACGGTTTT 782
||| || |||||||||| ||| | ||| |||||||| ||||||||||||||| ||||||
Sbjct 769 TCCTCGCAATGGTAATCAAAGCGTCTTAGTGGATTTCGATCTGCGTACGCCTTTGGTTTT 828
Query 783 CGACAACAAATACTATGTGAACCTTGGTGAGCGAAAAGGTCTTATCCAGAGCGACCAAGA 842
||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 829 CGACAACAAATACTATGTGAATCTTAAAGAGCAAAAAGGTCTTATCCAGAGCGACCAAGA 888
Query 843 ATTGTTCTCTAGCCCCAATGCCACGGACACAATCCCTTTGGTGAGATCATATGCTAATAG 902
||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| || |
Sbjct 889 GTTGTTCTCTAGCCCCAATGCCACTGACACAATCCCCTTGGTGAGAGCATATGCTGATGG 948
Query 903 CACACAAACCTTCTTCAATGCGTTTGTGGAGGCAATGAATAGGATGGGAAATATCACACC 962
||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 949 CACACAAACATTCTTCAATGCATTCGTGGAGGCAATGAATAGGATGGGAAATATTACACC 1008
Query 963 T-CTCACAGGAACTCAAGGACAAATCAGGTTGAATTGTAGGGTGGTGAATTCCAACTCTC 1021
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1009 AACT-ACAGGAACTCAAGGACAAATCAGGTTGAATTGTAGAGTGGTGAACTCCAACTCTC 1067
Query 1022 TACTCCATGATGTTGTTGAAATTGTTGACTTTGTTAGCTCTATGTGA 1068
||||||||||||| || || || ||||||||||| || |||||||||
Sbjct 1068 TACTCCATGATGTGGTGGATATCGTTGACTTTGTAAGTTCTATGTGA 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5