BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326979
Length=534
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24350.3 | Symbols: | Acid phosphatase/vanadium-dependent h... 468 3e-131
> AT1G24350.3 | Symbols: | Acid phosphatase/vanadium-dependent
haloperoxidase-related protein | chr1:8638982-8640825 REVERSE
LENGTH=924
Length=924
Score = 468 bits (253), Expect = 3e-131
Identities = 473/565 (84%), Gaps = 71/565 (13%)
Strand=Plus/Plus
Query 16 GCTACGTCTTCGTCTTCCACTCATTATTTCTCCATTTTCACGAATTATCCTCTGATTTCC 75
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 269 GCTACGTCTTCGTCTTCCACTCATTATTTCTCCATTTTCACGAATTATCCTCTCATTTCC 328
Query 76 GCCGTCACCTCTTTCACTATCGCTCAATTCATCAAACTCTTCACCTCCTGGTACGTTCTC 135
||||||||||||||||||||||||||||||||||||||| | | | | |
Sbjct 329 GCCGTCACCTCTTTCACTATCGCTCAATTCATCAAACTC-T----T-C----A------C 372
Query 136 TCTCTATATCTATGTATAGGGAACGGAGATGGGATCTCAAACAGCTTATTGGGTCCGGAG 195
||| || |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 373 -CTC-----CT-GGTATAGGGAACGGAGATGGGATCTCAAACAGCTTATTGGGTCTGGAG 425
Query 196 GAATG-------C-C-TT-------C-TT-CA---C-C-CTGTAGCTATTGCTTTGCAAG 232
||||| | | || | || || | | |||||||||||| ||| ||||
Sbjct 426 GAATGCCTTCTTCGCATTCAGCGACCGTTACAGCTCTCGCTGTAGCTATTGGTTTACAAG 485
Query 233 AGGGCTTTGGTGGATCGCATTTTGCCATTGCTTTGGTTTTGGCATCTGTTGTGATGTATG 292
| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 486 AAGGCTTTGGTGGATCACATTTTGCCATTGCTTTGATTTTGGCATCTGTTGTGATGTATG 545
Query 293 ATGCTACCGGTGTTAGATTACATGCCGGTCGTCAAGCTGAGGTTCTTAATCAGATTGTAT 352
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 546 ATGCTACCGGTGTTAGATTACATGCTGGTCGTCAAGCTGAGGTTCTCAATCAGATTGTAT 605
Query 353 ACCAACTTCCTGCAGAACATCCGCTGGCTGAAAGCAGACCTTTGCGGGAACTTCTCGGTC 412
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 606 ATGAACTTCCTGCAGAACATCCGCTGGCTGAAAGCAGACCTTTGCGGGAACTTCTTGGTC 665
Query 413 ATACCCCTCCCCAGGTA-T-A-----TTCTGT----T--T---TCCAT-T----TGCTGA 451
|||||||||||||| || | | || | | | | || | ||||||
Sbjct 666 ATACCCCTCCCCAGATAGTTACAGAGTTAGGGGAAATCATGAGTACAAATAGAGTGCTGA 725
Query 452 -G-AATTCAGGTCGTTGCTGGTGGAATGCTTGGAAGTGCCACAGCAGTCACTGGATACTT 509
| ||| | |||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 726 AGGAAT-C-GGTCGTTGCTGGTGGAATGCTTGGAAGTGCTACAGCAGTCACCGGATACTT 783
Query 510 ATTTTTCAGGATAGCTACAAGCTAA 534
|||||||||||||||||||||||||
Sbjct 784 ATTTTTCAGGATAGCTACAAGCTAA 808
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25569180823
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5