BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg326985
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT5G27140.1 | Symbols: | NOP56-like pre RNA processing ribonuc... 1489 0.0
AT5G27120.1 | Symbols: | NOP56-like pre RNA processing ribonuc... 1190 0.0
> AT5G27140.1 | Symbols: | NOP56-like pre RNA processing ribonucleoprotein
| chr5:9548542-9550597 FORWARD LENGTH=1338
Length=1338
Score = 1489 bits (806), Expect = 0.0
Identities = 1139/1296 (88%), Gaps = 37/1296 (3%)
Strand=Plus/Plus
Query 1 ATGCTAGTACTGTTTGAGACGTCAGGTGGTTTTGCACTCTTTAAAGTATTAGATGAAGGA 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCTCGTACTGTTTGAGACGTCAGGTGGTTTTGCACTCTTTAAAGTATTAGATGAAGGA 60
Query 61 AAGCTCTCTAATGTTGAGGATTTGGGTGA-TGAGTTCT-CGTCTGCAGAGTCAGCTCGAA 118
||||||||||||||||||||||||||| | |||||||| | |||||||||||||||||||
Sbjct 61 AAGCTCTCTAATGTTGAGGATTTGGGT-ACTGAGTTCTAC-TCTGCAGAGTCAGCTCGAA 118
Query 119 GGGGAACTTCAAGCAAAGGTCTACGCAAGTTCTTGAAAAATAACTGTGGTGATGGTGAAA 178
|| | | | ||||||| |||||| |||||||||||||||| |||||||||||
Sbjct 119 --GG-A--T---G----GGTCTACACAAGTTTTTGAAAAATAACTGTGATGATGGTGAAA 166
Query 179 CCTTAGCGGTGGCTGATTCAAATATTGGAAATATTATCACTGAGAAACTGGACGTACAAT 238
|||||| ||||||||| |||| ||||| |||| ||||| |||||||||||| || |||
Sbjct 167 TCTTAGCTGTGGCTGATCCAAAGCTTGGAGATATCATCACAGAGAAACTGGACATAGAAT 226
Query 239 GTGTTCACAACAACGCTGTTATGGAGCTATTACGCGGTGTGAGAAGCCAGTTAACCGAAC 298
||||||||||| | |||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 227 GTGTTCACAACGATGCTGTTATGGAGCTGTTACGAGGTGTGAGAAGTCAGTTAACCGAAC 286
Query 299 TTTTATCCGGATTGGATGATAACGATTTAGCTCCAATGAGCCTGGAATTGTCTCACATCC 358
|||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||
Sbjct 287 TTTTATCCGGATTGGATGATAATGATTTAGCTCCAGTGAGCTTGGAATTGTCTCACATCC 346
Query 359 TTGCTAGATATAAACTAAAAATCACCTCTGATAAGGTGGAGACCATGATAATCCAAGT-T 417
||||||||||||||||||||||||||||||| | ||||||||||||||| | | |
Sbjct 347 TTGCTAGATATAAACTAAAAATCACCTCTGA-CA-----AGACCATGATAATCCTA-TCT 399
Query 418 ATTGGTCTTCTTGATGATCTTGACAAAGAGCGTAACACTTACGCTATGAGGGTTCGTGAA 477
|| |||| |||||||||||||||||||||| |||||||||| ||| ||| ||| |||||
Sbjct 400 ATCAGTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACACTACGAGCGTTTGTGAA 459
Query 478 TGGTATGGTTGGCATTTTCCCGAGCTTGCGAAGATCGTACAGGACAATATCTTATATGCC 537
| ||| |||| |||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 460 TTGTACGGTTTGCATTTTCCCGAGCTTGCTAATATTGTACAGGACAATATCTTATATGCC 519
Query 538 AAGGCT-GTTAAACTAATGGGGAATCGGATTAATGCTGCAAATCTAGACTTCTCCGAGAT 596
|||| | |||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 520 AAGG-TGGTTAAACTAATGGGGAATCGGATTAATGCTGCAACGCTAGACTTCTCTGAGAT 578
Query 597 ATTGGCTGATGAAGTTGAAGCAGAACTTAAAGAGG-TTGCTGTGATATCTATGGGAACTG 655
||||||||||||||||||||||||||| ||||||| || || || | |||| | ||||||
Sbjct 579 ATTGGCTGATGAAGTTGAAGCAGAACTAAAAGAGGCTT-CTATGGTGTCTACGAGAACTG 637
Query 656 AAGTCACTGACCTTGATTTGATTCACATCCGACAACTCTGTGACC-AGATTCTGTCTCTT 714
|||||| ||||||||||||||| ||||||| | |||||||||||| || |||| || |
Sbjct 638 AAGTCAGTGACCTTGATTTGATGCACATCCAAGAACTCTGTGACCAAG-TTCTTTCAATC 696
Query 715 GCTGAGTACAGAGCTCAGCTTAATGACTACTTGAAGAGTAGAATGAACAAAATTGCACCA 774
|||||| ||| | ||| |||| |||| ||||||||| | |||||||||||||||||||
Sbjct 697 GCTGAGGACAAAACTCTGCTTTGTGACGACTTGAAGAACAAAATGAACAAAATTGCACCA 756
Query 775 AATCTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCCTTATT-TCTCATTGTGGTAG 833
||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 757 AATCTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGC-TTAATATCTCATTGTGGTAG 815
Query 834 TCTATTAAACCTCGCAAAGCTACC-TGGGAGCACGATTCAGATTCTTGGAGCTGAAAAGG 892
| ||| |||||| |||||||||| ||| ||||| ||||||||||||||||||||||||
Sbjct 816 TTTATGGAACCTCTCAAAGCTACCATGG-AGCACAATTCAGATTCTTGGAGCTGAAAAGA 874
Query 893 CCCTATATAGAGCCCGCAGGATGAACCACGCCACTCCAAAGCACGGTCTGATTTACCATG 952
||||||||| ||||| | || || || |||||||||||| | ||| | || ||||| |
Sbjct 875 CCCTATATAAAGCCCTTAAGACCAAACAAGCCACTCCAAAGTATGGTTTAATCTACCACG 934
Query 953 CACCTGTGGTTAGCCAAGCTGCACCAGAGCACAAGGGTAAAATCTCACGGTCATTAGCTG 1012
||||| ||||||| ||||||||||||||| |||||||||||||| |||| ||| ||||||
Sbjct 935 CACCTTTGGTTAGGCAAGCTGCACCAGAGAACAAGGGTAAAATCGCACGTTCACTAGCTG 994
Query 1013 CAAAAGCTGTTCTTGCTATCCGTTGTGATGCTTTTGGTGATGGACAAGACAACACAATGG 1072
||||| ||| |||||||||||| ||||||||||||||| |||| ||||||||||| ||||
Sbjct 995 CAAAATCTGCTCTTGCTATCCGGTGTGATGCTTTTGGTAATGGCCAAGACAACACTATGG 1054
Query 1073 GAGTGGAAACCCGCTTAAAGCTGGAAGCGCGTTTGAGAAATCTTGAAGGAGGGGATTTAG 1132
|||| |||| |||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1055 GAGTCGAAAGCCGCTTAAAGCTTGAAGCGCGCTTGAGAAATCTTGAAGGAGGAGATTTAG 1114
Query 1133 GAGCCTTCGAAGAAGAAGAAGT--TTATT-ACAAAGATAAAAAGAAGAAGGCTGATGATG 1189
|||| | |||||||||||||| ||| | ||||||||| ||||||| ||||||||||||
Sbjct 1115 GAGCATGCGAAGAAGAAGAAGAAGTTAATGACAAAGATACAAAGAAGGAGGCTGATGATG 1174
Query 1190 AGGAAGAACCCAAAACTGAGGAGCCTTCGAAGAAGAAGAAGACAGAAGCAGAACTTGAAA 1249
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1175 AGGAAGAACCCAAAACTGAGGAGTGTTCGAAGAAGAGGAAGAAAGAAGCAGAACTTGAAA 1234
Query 1250 CCGCCAAAGAGCCCGTAAAGAAGAGTAAACACGAGG 1285
||| |||| |||| ||||||||| ||||| ||||
Sbjct 1235 CCGTGGAAGATCCCGCAAAGAAGAGCAAACAAGAGG 1270
> AT5G27120.1 | Symbols: | NOP56-like pre RNA processing ribonucleoprotein
| chr5:9540925-9543871 FORWARD LENGTH=1856
Length=1856
Score = 1190 bits (644), Expect = 0.0
Identities = 897/1020 (88%), Gaps = 13/1020 (1%)
Strand=Plus/Plus
Query 120 GGGAACTTCAAGCAAAGGTCTACGCAAGTTCTTGAAAAATAACTGTGGTGATGGTGAAAC 179
||||||| ||||||| |||||||||||||| |||||| ||||||| || |||||||||
Sbjct 262 GGGAACTCCAAGCAAGGGTCTACGCAAGTTTTTGAAAGCTAACTGT-GT--TGGTGAAAC 318
Query 180 CTTAGCGGTGGCTGATTCAAATATTGGAAATATTATCACTGAGAAACTGGACGTACAATG 239
||||| || |||||||| || |||||||||| |||| ||||||||| | || ||
Sbjct 319 ATTAGCTGTTGCTGATTCTAAGCTTGGAAATATCATCAAGGAGAAACTGAAAATAGTCTG 378
Query 240 TGTTCACAACAACGCTGTTATGGAGCTATTACGCGGTGTGAGAAGCCAGTTAACCGAACT 299
|||||||||||| |||||||||||||| ||| | ||| | ||||||||| |||| |||||
Sbjct 379 TGTTCACAACAATGCTGTTATGGAGCTGTTAAGAGGTATCAGAAGCCAGCTAACTGAACT 438
Query 300 TTTATCCGGATTGGATGAT-AACGATTTAGCTCCAATGAGCCTGGAATTGTCTCACATCC 358
| |||| ||||||| |||| || ||| ||| |||||||||| ||| |||||||||| ||
Sbjct 439 TATATCTGGATTGGGTGATCAA-GATCTAGGTCCAATGAGCTTGGGGTTGTCTCACAGCC 497
Query 359 TTGCTAGATATAAACTAAAAATCACCTCTGATAAGGTGGAGACCATGATAATCCAAGTTA 418
|||| |||||||||||||| ||| || || |||||||| |||||||||||||||| ||
Sbjct 498 TTGCCAGATATAAACTAAAGTTCAGTTCCGACAAGGTGGATACCATGATAATCCAAGCTA 557
Query 419 TTGGTCTTCTTGATGATCTTGACAAAGAGCGTAACACTTACGCTATGAGGGTTCGTGAAT 478
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 558 TTGGTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACGCTATGAGGGTTCGTGAAT 617
Query 479 GGTATGGTTGGCATTTTCCCGAGCTTGCGAAGATCGTACAGGACAATATCTTATATGCCA 538
||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 618 GGTTTGGTTGGCATTTTCCTGAGCTTGCTAAGATCGTACAGGACAATATCTTATATGCCA 677
Query 539 AGGCTGTTAAACTAATGGGGAATCGGATTAATGCTGCAAATCTAGACTTCTCCGAGATAT 598
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 678 AGGCTGTTAAACTAATGGGGAATCGGATTAATGCTGCAAAGCTAGACTTCTCTGAGATAT 737
Query 599 TGGCTGATGAAGTTGAAGCAGAACTTAAAGAGGTTGCTGTGATATCTATGGGAACTGAAG 658
||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 738 TGGCTGATGAAATTGAAGCAGAACTGAAAGAGGCTGCTGTGATATCTATGGGAACTGAAG 797
Query 659 TCACTGACCTTGATTTGATT-CACATCCGACAACTCTGTGACCAGATTCTGTCTCTTGCT 717
||| |||||||||||| ||| ||||||||| |||||||||||||| |||| ||||||||
Sbjct 798 TCAGTGACCTTGATTT-ATTGCACATCCGAGAACTCTGTGACCAGGTTCTTTCTCTTGCC 856
Query 718 GAGTACAGAGCTCAGCTTAATGACTACTTGAAGAGTAGAATGAACAAAATTGCACCAAAT 777
|||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||
Sbjct 857 GAGTACAGAGCTCAGCTTTATGACTACTTGAAGAGCAGAATGAACACAATTGCACCAAAT 916
Query 778 CTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCCTTATT-TCTCATTGTGGTAGTCT 836
|||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||| |
Sbjct 917 CTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGC-TTAATATCTCACGGTGGTAGTTT 975
Query 837 ATTAAACCTCGCAAAGCTACCTGGGAGCACGATTCAGATTCTTGGAGCTGAAAAGGCCCT 896
|| ||||||||||||| |||||| |||||| |||||||||||||||||||||| ||| |
Sbjct 976 GTTGAACCTCGCAAAGCAACCTGGAAGCACGGTTCAGATTCTTGGAGCTGAAAAAGCCTT 1035
Query 897 ATATAGAGCCCGCAGGATGAACCACGCCACTCCAAAGCACGGTCTGATTTACCATGCACC 956
|| |||||||| | || || ||||| ||||||||| | ||| | |||| ||||||| |
Sbjct 1036 ATTTAGAGCCCTTAAGACCAAACACGCTACTCCAAAGTATGGTTTAATTTTCCATGCATC 1095
Query 957 TGTGGTTAGCCAAGCTGCACCAGA-GCACAAGGGTAAAATCTCACGGTCATTAGCTGCAA 1015
||| ||| ||||||||||||| || | ||||||||||||| ||||||||| |||||||||
Sbjct 1096 TGTTGTTGGCCAAGCTGCACC-GAAGAACAAGGGTAAAATTTCACGGTCACTAGCTGCAA 1154
Query 1016 AAGCTGTTCTTGCTATCCGTTGTGATGCTTTTGGTGA-TGGACAAGACAACACAATGGGA 1074
|| |||||||||||||||||||||||||| ||||||| | ||||||||||| ||||||
Sbjct 1155 AATCTGTTCTTGCTATCCGTTGTGATGCTCTTGGTGACTCC-CAAGACAACACTATGGGA 1213
Query 1075 GTGGAAACCCGCTTAAAGCTGGAAGCGCGTTTGAGAAATCTTGAAGGAGGGGATTTAGGA 1134
|| |||| ||| |||||||| ||||| || ||||||| ||| |||||| |||||||||
Sbjct 1214 GTTGAAAACCGTTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAAGGAAAAGATTTAGGA 1273
Score = 147 bits (79), Expect = 4e-34
Identities = 106/119 (89%), Gaps = 2/119 (2%)
Strand=Plus/Plus
Query 1 ATGCTAGTACTGTTTGAGACGTCAGGTGGTTTTG-CACTCTTTAAAGTATTAGATGAAGG 59
|||||| |||||||||||||| |||||||||||| || |||| ||||||||| | |||||
Sbjct 68 ATGCTAATACTGTTTGAGACGCCAGGTGGTTTTGCCA-TCTTCAAAGTATTAAACGAAGG 126
Query 60 AAAGCTCTCTAATGTTGAGGATTTGGGTGATGAGTTCTCGTCTGCAGAGTCAGCTCGAA 118
|||||||||||||||||||||||||||| ||||||||||| | ||| ||| ||| ||||
Sbjct 127 AAAGCTCTCTAATGTTGAGGATTTGGGTAATGAGTTCTCGACCGCAAAGTTAGCCCGAA 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5