BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg326985 Length=1362 Score E Sequences producing significant alignments: (Bits) Value AT5G27140.1 | Symbols: | NOP56-like pre RNA processing ribonuc... 1489 0.0 AT5G27120.1 | Symbols: | NOP56-like pre RNA processing ribonuc... 1190 0.0 > AT5G27140.1 | Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr5:9548542-9550597 FORWARD LENGTH=1338 Length=1338 Score = 1489 bits (806), Expect = 0.0 Identities = 1139/1296 (88%), Gaps = 37/1296 (3%) Strand=Plus/Plus Query 1 ATGCTAGTACTGTTTGAGACGTCAGGTGGTTTTGCACTCTTTAAAGTATTAGATGAAGGA 60 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGCTCGTACTGTTTGAGACGTCAGGTGGTTTTGCACTCTTTAAAGTATTAGATGAAGGA 60 Query 61 AAGCTCTCTAATGTTGAGGATTTGGGTGA-TGAGTTCT-CGTCTGCAGAGTCAGCTCGAA 118 ||||||||||||||||||||||||||| | |||||||| | ||||||||||||||||||| Sbjct 61 AAGCTCTCTAATGTTGAGGATTTGGGT-ACTGAGTTCTAC-TCTGCAGAGTCAGCTCGAA 118 Query 119 GGGGAACTTCAAGCAAAGGTCTACGCAAGTTCTTGAAAAATAACTGTGGTGATGGTGAAA 178 || | | | ||||||| |||||| |||||||||||||||| ||||||||||| Sbjct 119 --GG-A--T---G----GGTCTACACAAGTTTTTGAAAAATAACTGTGATGATGGTGAAA 166 Query 179 CCTTAGCGGTGGCTGATTCAAATATTGGAAATATTATCACTGAGAAACTGGACGTACAAT 238 |||||| ||||||||| |||| ||||| |||| ||||| |||||||||||| || ||| Sbjct 167 TCTTAGCTGTGGCTGATCCAAAGCTTGGAGATATCATCACAGAGAAACTGGACATAGAAT 226 Query 239 GTGTTCACAACAACGCTGTTATGGAGCTATTACGCGGTGTGAGAAGCCAGTTAACCGAAC 298 ||||||||||| | |||||||||||||| ||||| ||||||||||| ||||||||||||| Sbjct 227 GTGTTCACAACGATGCTGTTATGGAGCTGTTACGAGGTGTGAGAAGTCAGTTAACCGAAC 286 Query 299 TTTTATCCGGATTGGATGATAACGATTTAGCTCCAATGAGCCTGGAATTGTCTCACATCC 358 |||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| Sbjct 287 TTTTATCCGGATTGGATGATAATGATTTAGCTCCAGTGAGCTTGGAATTGTCTCACATCC 346 Query 359 TTGCTAGATATAAACTAAAAATCACCTCTGATAAGGTGGAGACCATGATAATCCAAGT-T 417 ||||||||||||||||||||||||||||||| | ||||||||||||||| | | | Sbjct 347 TTGCTAGATATAAACTAAAAATCACCTCTGA-CA-----AGACCATGATAATCCTA-TCT 399 Query 418 ATTGGTCTTCTTGATGATCTTGACAAAGAGCGTAACACTTACGCTATGAGGGTTCGTGAA 477 || |||| |||||||||||||||||||||| |||||||||| ||| ||| ||| ||||| Sbjct 400 ATCAGTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACACTACGAGCGTTTGTGAA 459 Query 478 TGGTATGGTTGGCATTTTCCCGAGCTTGCGAAGATCGTACAGGACAATATCTTATATGCC 537 | ||| |||| |||||||||||||||||| || || |||||||||||||||||||||||| Sbjct 460 TTGTACGGTTTGCATTTTCCCGAGCTTGCTAATATTGTACAGGACAATATCTTATATGCC 519 Query 538 AAGGCT-GTTAAACTAATGGGGAATCGGATTAATGCTGCAAATCTAGACTTCTCCGAGAT 596 |||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 520 AAGG-TGGTTAAACTAATGGGGAATCGGATTAATGCTGCAACGCTAGACTTCTCTGAGAT 578 Query 597 ATTGGCTGATGAAGTTGAAGCAGAACTTAAAGAGG-TTGCTGTGATATCTATGGGAACTG 655 ||||||||||||||||||||||||||| ||||||| || || || | |||| | |||||| Sbjct 579 ATTGGCTGATGAAGTTGAAGCAGAACTAAAAGAGGCTT-CTATGGTGTCTACGAGAACTG 637 Query 656 AAGTCACTGACCTTGATTTGATTCACATCCGACAACTCTGTGACC-AGATTCTGTCTCTT 714 |||||| ||||||||||||||| ||||||| | |||||||||||| || |||| || | Sbjct 638 AAGTCAGTGACCTTGATTTGATGCACATCCAAGAACTCTGTGACCAAG-TTCTTTCAATC 696 Query 715 GCTGAGTACAGAGCTCAGCTTAATGACTACTTGAAGAGTAGAATGAACAAAATTGCACCA 774 |||||| ||| | ||| |||| |||| ||||||||| | ||||||||||||||||||| Sbjct 697 GCTGAGGACAAAACTCTGCTTTGTGACGACTTGAAGAACAAAATGAACAAAATTGCACCA 756 Query 775 AATCTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCCTTATT-TCTCATTGTGGTAG 833 ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| Sbjct 757 AATCTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGC-TTAATATCTCATTGTGGTAG 815 Query 834 TCTATTAAACCTCGCAAAGCTACC-TGGGAGCACGATTCAGATTCTTGGAGCTGAAAAGG 892 | ||| |||||| |||||||||| ||| ||||| |||||||||||||||||||||||| Sbjct 816 TTTATGGAACCTCTCAAAGCTACCATGG-AGCACAATTCAGATTCTTGGAGCTGAAAAGA 874 Query 893 CCCTATATAGAGCCCGCAGGATGAACCACGCCACTCCAAAGCACGGTCTGATTTACCATG 952 ||||||||| ||||| | || || || |||||||||||| | ||| | || ||||| | Sbjct 875 CCCTATATAAAGCCCTTAAGACCAAACAAGCCACTCCAAAGTATGGTTTAATCTACCACG 934 Query 953 CACCTGTGGTTAGCCAAGCTGCACCAGAGCACAAGGGTAAAATCTCACGGTCATTAGCTG 1012 ||||| ||||||| ||||||||||||||| |||||||||||||| |||| ||| |||||| Sbjct 935 CACCTTTGGTTAGGCAAGCTGCACCAGAGAACAAGGGTAAAATCGCACGTTCACTAGCTG 994 Query 1013 CAAAAGCTGTTCTTGCTATCCGTTGTGATGCTTTTGGTGATGGACAAGACAACACAATGG 1072 ||||| ||| |||||||||||| ||||||||||||||| |||| ||||||||||| |||| Sbjct 995 CAAAATCTGCTCTTGCTATCCGGTGTGATGCTTTTGGTAATGGCCAAGACAACACTATGG 1054 Query 1073 GAGTGGAAACCCGCTTAAAGCTGGAAGCGCGTTTGAGAAATCTTGAAGGAGGGGATTTAG 1132 |||| |||| |||||||||||| |||||||| |||||||||||||||||||| ||||||| Sbjct 1055 GAGTCGAAAGCCGCTTAAAGCTTGAAGCGCGCTTGAGAAATCTTGAAGGAGGAGATTTAG 1114 Query 1133 GAGCCTTCGAAGAAGAAGAAGT--TTATT-ACAAAGATAAAAAGAAGAAGGCTGATGATG 1189 |||| | |||||||||||||| ||| | ||||||||| ||||||| |||||||||||| Sbjct 1115 GAGCATGCGAAGAAGAAGAAGAAGTTAATGACAAAGATACAAAGAAGGAGGCTGATGATG 1174 Query 1190 AGGAAGAACCCAAAACTGAGGAGCCTTCGAAGAAGAAGAAGACAGAAGCAGAACTTGAAA 1249 ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 1175 AGGAAGAACCCAAAACTGAGGAGTGTTCGAAGAAGAGGAAGAAAGAAGCAGAACTTGAAA 1234 Query 1250 CCGCCAAAGAGCCCGTAAAGAAGAGTAAACACGAGG 1285 ||| |||| |||| ||||||||| ||||| |||| Sbjct 1235 CCGTGGAAGATCCCGCAAAGAAGAGCAAACAAGAGG 1270 > AT5G27120.1 | Symbols: | NOP56-like pre RNA processing ribonucleoprotein | chr5:9540925-9543871 FORWARD LENGTH=1856 Length=1856 Score = 1190 bits (644), Expect = 0.0 Identities = 897/1020 (88%), Gaps = 13/1020 (1%) Strand=Plus/Plus Query 120 GGGAACTTCAAGCAAAGGTCTACGCAAGTTCTTGAAAAATAACTGTGGTGATGGTGAAAC 179 ||||||| ||||||| |||||||||||||| |||||| ||||||| || ||||||||| Sbjct 262 GGGAACTCCAAGCAAGGGTCTACGCAAGTTTTTGAAAGCTAACTGT-GT--TGGTGAAAC 318 Query 180 CTTAGCGGTGGCTGATTCAAATATTGGAAATATTATCACTGAGAAACTGGACGTACAATG 239 ||||| || |||||||| || |||||||||| |||| ||||||||| | || || Sbjct 319 ATTAGCTGTTGCTGATTCTAAGCTTGGAAATATCATCAAGGAGAAACTGAAAATAGTCTG 378 Query 240 TGTTCACAACAACGCTGTTATGGAGCTATTACGCGGTGTGAGAAGCCAGTTAACCGAACT 299 |||||||||||| |||||||||||||| ||| | ||| | ||||||||| |||| ||||| Sbjct 379 TGTTCACAACAATGCTGTTATGGAGCTGTTAAGAGGTATCAGAAGCCAGCTAACTGAACT 438 Query 300 TTTATCCGGATTGGATGAT-AACGATTTAGCTCCAATGAGCCTGGAATTGTCTCACATCC 358 | |||| ||||||| |||| || ||| ||| |||||||||| ||| |||||||||| || Sbjct 439 TATATCTGGATTGGGTGATCAA-GATCTAGGTCCAATGAGCTTGGGGTTGTCTCACAGCC 497 Query 359 TTGCTAGATATAAACTAAAAATCACCTCTGATAAGGTGGAGACCATGATAATCCAAGTTA 418 |||| |||||||||||||| ||| || || |||||||| |||||||||||||||| || Sbjct 498 TTGCCAGATATAAACTAAAGTTCAGTTCCGACAAGGTGGATACCATGATAATCCAAGCTA 557 Query 419 TTGGTCTTCTTGATGATCTTGACAAAGAGCGTAACACTTACGCTATGAGGGTTCGTGAAT 478 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 558 TTGGTCTGCTTGATGATCTTGACAAAGAGCTTAACACTTACGCTATGAGGGTTCGTGAAT 617 Query 479 GGTATGGTTGGCATTTTCCCGAGCTTGCGAAGATCGTACAGGACAATATCTTATATGCCA 538 ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 618 GGTTTGGTTGGCATTTTCCTGAGCTTGCTAAGATCGTACAGGACAATATCTTATATGCCA 677 Query 539 AGGCTGTTAAACTAATGGGGAATCGGATTAATGCTGCAAATCTAGACTTCTCCGAGATAT 598 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 678 AGGCTGTTAAACTAATGGGGAATCGGATTAATGCTGCAAAGCTAGACTTCTCTGAGATAT 737 Query 599 TGGCTGATGAAGTTGAAGCAGAACTTAAAGAGGTTGCTGTGATATCTATGGGAACTGAAG 658 ||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 738 TGGCTGATGAAATTGAAGCAGAACTGAAAGAGGCTGCTGTGATATCTATGGGAACTGAAG 797 Query 659 TCACTGACCTTGATTTGATT-CACATCCGACAACTCTGTGACCAGATTCTGTCTCTTGCT 717 ||| |||||||||||| ||| ||||||||| |||||||||||||| |||| |||||||| Sbjct 798 TCAGTGACCTTGATTT-ATTGCACATCCGAGAACTCTGTGACCAGGTTCTTTCTCTTGCC 856 Query 718 GAGTACAGAGCTCAGCTTAATGACTACTTGAAGAGTAGAATGAACAAAATTGCACCAAAT 777 |||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||| Sbjct 857 GAGTACAGAGCTCAGCTTTATGACTACTTGAAGAGCAGAATGAACACAATTGCACCAAAT 916 Query 778 CTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGCCTTATT-TCTCATTGTGGTAGTCT 836 |||||||||||||||||||||||||||||||||||| ||| | ||||| |||||||| | Sbjct 917 CTAACTGCCCTTGTCGGGGAGCTAGTCGGTGCTCGC-TTAATATCTCACGGTGGTAGTTT 975 Query 837 ATTAAACCTCGCAAAGCTACCTGGGAGCACGATTCAGATTCTTGGAGCTGAAAAGGCCCT 896 || ||||||||||||| |||||| |||||| |||||||||||||||||||||| ||| | Sbjct 976 GTTGAACCTCGCAAAGCAACCTGGAAGCACGGTTCAGATTCTTGGAGCTGAAAAAGCCTT 1035 Query 897 ATATAGAGCCCGCAGGATGAACCACGCCACTCCAAAGCACGGTCTGATTTACCATGCACC 956 || |||||||| | || || ||||| ||||||||| | ||| | |||| ||||||| | Sbjct 1036 ATTTAGAGCCCTTAAGACCAAACACGCTACTCCAAAGTATGGTTTAATTTTCCATGCATC 1095 Query 957 TGTGGTTAGCCAAGCTGCACCAGA-GCACAAGGGTAAAATCTCACGGTCATTAGCTGCAA 1015 ||| ||| ||||||||||||| || | ||||||||||||| ||||||||| ||||||||| Sbjct 1096 TGTTGTTGGCCAAGCTGCACC-GAAGAACAAGGGTAAAATTTCACGGTCACTAGCTGCAA 1154 Query 1016 AAGCTGTTCTTGCTATCCGTTGTGATGCTTTTGGTGA-TGGACAAGACAACACAATGGGA 1074 || |||||||||||||||||||||||||| ||||||| | ||||||||||| |||||| Sbjct 1155 AATCTGTTCTTGCTATCCGTTGTGATGCTCTTGGTGACTCC-CAAGACAACACTATGGGA 1213 Query 1075 GTGGAAACCCGCTTAAAGCTGGAAGCGCGTTTGAGAAATCTTGAAGGAGGGGATTTAGGA 1134 || |||| ||| |||||||| ||||| || ||||||| ||| |||||| ||||||||| Sbjct 1214 GTTGAAAACCGTTTAAAGCTTGAAGCACGGTTGAGAACTCTCGAAGGAAAAGATTTAGGA 1273 Score = 147 bits (79), Expect = 4e-34 Identities = 106/119 (89%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 ATGCTAGTACTGTTTGAGACGTCAGGTGGTTTTG-CACTCTTTAAAGTATTAGATGAAGG 59 |||||| |||||||||||||| |||||||||||| || |||| ||||||||| | ||||| Sbjct 68 ATGCTAATACTGTTTGAGACGCCAGGTGGTTTTGCCA-TCTTCAAAGTATTAAACGAAGG 126 Query 60 AAAGCTCTCTAATGTTGAGGATTTGGGTGATGAGTTCTCGTCTGCAGAGTCAGCTCGAA 118 |||||||||||||||||||||||||||| ||||||||||| | ||| ||| ||| |||| Sbjct 127 AAAGCTCTCTAATGTTGAGGATTTGGGTAATGAGTTCTCGACCGCAAAGTTAGCCCGAA 185 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67067928120 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5