BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327005
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1175 0.0
AT5G28160.1 | Symbols: | Galactose oxidase/kelch repeat superf... 935 0.0
AT4G39756.1 | Symbols: | Galactose oxidase/kelch repeat superf... 111 1e-23
> AT5G28180.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:10162783-10163943 FORWARD LENGTH=1059
Length=1059
Score = 1175 bits (636), Expect = 0.0
Identities = 879/996 (88%), Gaps = 17/996 (2%)
Strand=Plus/Plus
Query 86 CCTTACTTTACAAAACCTTCTCTAGAAAGGAGAAGAAGCTGACGTTTTTGTCGCTCCCTG 145
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 65 CCTTACTTTACAAAACTTTCTCTAGAAAGGAAAAGAAGCTGACGTTTTTGTCGCTCCCTG 124
Query 146 ATGAAATCATCTTGAACTGTTTAGCCCGCATATCGAGATCACACTACCCGAAACTCTCCC 205
|||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 125 ATGAAATCGTCTTGAACTGTTTAGCCCGCATATCGAGATCGTACTATCCGAAACTCTCCC 184
Query 206 TTGTCTCCAAGACCTTTCGCTCCCTTCTCATGTCCCATAAGCTCAACGTGGAGCGATTTC 265
| |||| ||||||||| ||| | || ||||| || | |||||| ||||| |||| | |
Sbjct 185 TAGTCTGCAAGACCTTCCGCACTCTCCTCATATCTAACGAGCTCACCGTGGCGCGAGTGC 244
Query 266 ACCTTAAAACC-ACTGAAACtttttttCATGTCTGCTTAAAGCTTCCTGATAGACCTAGT 324
| ||||||||| || |||| |||||||||||||||||||||| ||||||||| ||||| |
Sbjct 245 AACTTAAAACCTAC-GAAAGTTTTTTTCATGTCTGCTTAAAGTTTCCTGATAAACCTAAT 303
Query 325 CCCTCCATGTTCACCCTTTGGATAAAACCTGGTCAAATCCTAATGAACCAACTCGAGAAG 384
|| || ||||||||||| ||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 304 CCATCAATGTTCACCCTCTGGATAAAACCTGGTCAAATCTTAACCAACCAACTTGAGAAG 363
Query 385 AAGGAGAGGTCTACCGGAGATACTCGGTTGGTACAAATACCTTCGTCATATTATAATAAA 444
|| ||||||||||| |||| |||||||||||||||||||||||| ||||||| | ||
Sbjct 364 AACGAGAGGTCTACAGGAGCTACTCGGTTGGTACAAATACCTTCTTCATATTGTTCTATT 423
Query 445 GTACCACTTTATGTCATTACTGTTGGTTCCGAATTGTACGGACTCAGCCAACGCAATGAT 504
||||||| ||| | ||| |||||||||||||| | |||||||||||||||| |||||||
Sbjct 424 GTACCACATTACCTAATTTCTGTTGGTTCCGAAGTATACGGACTCAGCCAACACAATGAT 483
Query 505 CCGTCCTCCAACATGTTGGTGCGTAATAAGGAGTTTTTGTTTTGCCGTAATTCTCCCAA- 563
||||||||||||||||| || ||||| |||||| ||||||||| ||||| | |||||
Sbjct 484 CCGTCCTCCAACATGTTTGTCCGTAACAAGGAGGATTTGTTTTGGTGTAATGC-CCCAAA 542
Query 564 CATGATTGTAGCTCGAGCTAAAGCC--CGTGCAGTCGTCTTCTATGGGAAAATATATGTG 621
||||| |||||||||||| |||||| || ||| || || | |||||||| |||||||
Sbjct 543 CATGACTGTAGCTCGAGCGAAAGCCATCGGGCA--CGCCTACAATGGGAAACTATATGTC 600
Query 622 ATGGGAGGTTGC-GCGGCTAATGAATCCGCGAATTGGGGTGAGGTTTTTGACCCAAAGAC 680
|||||||||||| | || | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 ATGGGAGGTTGCAG-GGATGATGAATCCGTGAATTGGGGTGAGGTTTTTGACCCAAAGAC 659
Query 681 TCAAATTTGGGAAGCTTTACCTGACCCTGGCCCGGAGCTCCGCTTTTCTTCAATTAGAGG 740
||||| ||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 660 TCAAACTTGGGAAGCTTTACCTGACCCTGGCTCTGAGCTCCGTTTTTCTTCAATTAGAAA 719
Query 741 AATAGAGGTGATCGAAGGAAAGCTTTACATTAGAAGCAACGAGGAAAA-AGACTCTGTTT 799
|||||| ||| || ||| |||||||||| |||| ||||||||| || | |||||||||||
Sbjct 720 AATAGATGTGTTCCAAGAAAAGCTTTACGTTAGCAGCAACGAG-AAGATAGACTCTGTTT 778
Query 800 ATGATCCAAAAGAAGGTAAATGGGATGTTGCaaaaaaaTCACACC-TGCAATGTATGA-T 857
||||||||||||||||||||||| |||||||| ||||||||| | |||||||||||| |
Sbjct 779 ATGATCCAAAAGAAGGTAAATGGAATGTTGCAGAAAAATCAC-CTGTGCAATGTATGAAT 837
Query 858 A--GGTTGTGGAATGATTGAAATAGCTAACTATGGTGGTAAACTCTTAATCTTATGGGAC 915
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 838 CTTGGTTGTGGAATGATTGAAATAGCTAACTATGGTGGAAAACTCTTAATCTTATGGGAC 897
Query 916 AAGATTGGTCCTTCTCAAGAAAAAGATATTTGGTGTGCCTTGATTGCGATTGAGAAACGT 975
||| |||||| ||||||||| ||||||||||||||||| |||||||| |||| ||||||
Sbjct 898 AAGGTTGGTCTTTCTCAAGACAAAGATATTTGGTGTGCGGTGATTGCGCTTGAAAAACGT 957
Query 976 GATGGTATTGATGAAGTTTGGGGAAAAATTGAGTGGGCTAGTATTGTGCTTACGGTTCCG 1035
|||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 958 GATGGTGTTGATGAAGTTTGGGGGAAAATTGAGTGGGCTAGTATCGTGCTTACGGTTCCA 1017
Query 1036 TGCTCATACGTTTTCTTGTATAGTCTACTAAACAGG 1071
||||||||||||||||||||||||||||||| |||
Sbjct 1018 AGCTCATACGTTTTCTTGTATAGTCTACTAAATAGG 1053
> AT5G28160.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:10137926-10139013 FORWARD LENGTH=975
Length=975
Score = 935 bits (506), Expect = 0.0
Identities = 813/959 (85%), Gaps = 29/959 (3%)
Strand=Plus/Plus
Query 128 CGTTTTTGTCGCTCCCTGATGAAATCATCTTGAACTGTTTAGCCCGCATATCGAGATCAC 187
|||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 26 CGTTTTTGTCACTACCTGATGAAATCATCTTGAGCTGTTTAGCCCGCATATCGAGATCGT 85
Query 188 ACTACCCGAAACTCTCCCTTGTCTCCAAGACCTTTCGCTCCCTTCTCATGTCCCATAAGC 247
|||| |||||||||||||| || | ||||||||| ||| | || ||||| || || |||
Sbjct 86 ACTATCCGAAACTCTCCCTAGTTTGCAAGACCTTCCGCACTCTCCTCATATCTAATGAGC 145
Query 248 TCAACGTGGAGCGATTTCACCTTAAAA-CCACTGAAACtttttttCATGTCTGCTTAAAG 306
||| |||| |||||| ||||| |||| ||| |||||| |||| ||||||||||||||||
Sbjct 146 TCATTGTGGCGCGATTGCACCTCAAAACCCA-TGAAACCTTTTGTCATGTCTGCTTAAAG 204
Query 307 CTTCCTGATAGACCTAGTCCCTCCATGTTCACCCTTTGGATAAAACCTGGTCA-AATCCT 365
||||||||| ||||| ||| || ||||||||||| ||||||||||||||| | |||| |
Sbjct 205 TTTCCTGATAAACCTAATCCGTCAATGTTCACCCTCTGGATAAAACCTGGT-ACAATCTT 263
Query 366 AATGAACCAACTCGAGAAGAAGGAGAGGTCTACCGGAGATACTCGGTTGGTACAAATACC 425
|| |||||||| |||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 264 AACCAACCAACTTGAGAAGAACAAGAGGTCTACAAGAGATACTCGGTTGGTACAAATACC 323
Query 426 TTCGTCATATTATAATAAAGTACCACTTTATGTCATTACT-GTTGGTTCCGAATTGTACG 484
||| ||||||||| |||| ||||| |||| || ||| | |||||||||||| | ||||
Sbjct 324 TTCTTCATATTATTATAATGTACCGTTTTACCTCGTTA-TGGTTGGTTCCGAAGTATACG 382
Query 485 GACTCAGCCAACGCAATGATCCGTCCTCCAACATGTTGGTGCGTAATAAGGAGT-T-TTT 542
||||||||||||||||||||||||||||||||||||| || |||||||||| | | |||
Sbjct 383 GACTCAGCCAACGCAATGATCCGTCCTCCAACATGTTTGTCCGTAATAAGGGGGATATTT 442
Query 543 GTTTTGCCGTAATTCTCCCAA-CATGATTGTAGCTCGAGCTAAAGCCCGTGCAGTCGTCT 601
||||| |||| | ||||| ||||| ||||||||||||||||||| ||||||| ||||
Sbjct 443 -TTTTGT-GTAAAGC-CCCAAACATGACTGTAGCTCGAGCTAAAGCCAGTGCAGTTGTCT 499
Query 602 TCTATGGGAAAATATATGTGATGGGAGGTTGCGCGGCTAATGAATCCGCGAATTGGGGTG 661
|| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||
Sbjct 500 TCAATGGGAAAATATATGTGATGGGAGGTTGCATGGCTGATGAATCCGTGAATTGGGGTG 559
Query 662 AGGTTTTTGACCCAAAGACTCAAATTTGGGAAGCTTTACCTGACCCTGGCCCGGAGCTCC 721
| ||||||||| ||||||||||| |||||||||||||||||||||||| || ||| |||
Sbjct 560 AAGTTTTTGACATAAAGACTCAAACTTGGGAAGCTTTACCTGACCCTGGTCCTGAGTTCC 619
Query 722 GCTTTTCTTCAATTAGAGGAATAGAGGTGATCGAAGGAAAGCTTTACATTAGAAGCAACG 781
| ||||||||||||||| |||||| ||| || ||| |||||||||| ||||||||||||
Sbjct 620 GTTTTTCTTCAATTAGAAAAATAGATGTGTTCCAAGAAAAGCTTTACGTTAGAAGCAACG 679
Query 782 AGGAA-AAAGACTCTGTTTATGATCCAAAAGAAGGTAAATGG-GA-TGTTGCaaaaaaaT 838
|| || |||||||||||||||||||||||||||| || ||| || || | |||| |
Sbjct 680 AG-AAGAAAGACTCTGTTTATGATCCAAAAGAAG--AA-TGGAGAGTGGT-CAAAGGTTT 734
Query 839 C-ACACCT-GCA-ATGTATGATAGGTTGTGGAATGATTGAAATAGCTAACTATGGTGGTA 895
||| | | | | | || | |||||||| | ||||||||| | | ||||||| || |
Sbjct 735 AGACATGTTGAACAGGAATCTT-GGTTGTGGTACGATTGAAATTGTTCACTATGGCGGAA 793
Query 896 AACTCTTAATCTTATGGGACAAGATTGGTCCTTCTCAAGAAAAAGATATTTGGTGTGCCT 955
||||||||||||||||||||||| | | || |||||| || |||||||||||||||||
Sbjct 794 AACTCTTAATCTTATGGGACAAGGTAGATCTTTCTCATGACAAAGATATTTGGTGTGCGG 853
Query 956 TGATTGCGATTGAGAAACGTGATGGTATTGATGAAGTTTGGGGAAAAATTGAGTGGGCT- 1014
|||||||| |||| |||||| |||||| |||||||||||||||||| ||||| ||||||
Sbjct 854 TGATTGCGCTTGAAAAACGTCATGGTAGTGATGAAGTTTGGGGAAACATTGAATGGGCTG 913
Query 1015 AGTATTGTGCTTACGGTTCCGT-GCTCATACGTTTTCTTGTATAGTCTACTAAACAGGT 1072
| ||||||||| |||||||| | |||||||||||||| || |||||||| |||| |||
Sbjct 914 A-TATTGTGCTGACGGTTCC-TAGCTCATACGTTTTCGTGAATAGTCTAG-AAACTGGT 969
> AT4G39756.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:18441756-18443000 FORWARD LENGTH=1195
Length=1195
Score = 111 bits (60), Expect = 1e-23
Identities = 150/191 (79%), Gaps = 15/191 (8%)
Strand=Plus/Plus
Query 872 TTGAAATAGCTAACTATGGTGGTAAACTCTTAATCTTATGGGACAA-GATTG-G--TCC- 926
||||| |||| || || |||| ||| |||||||||| ||||| || ||| | ||
Sbjct 917 TTGAAGTAGCGAAGTACGGTGACAAAGTCTTAATCTTGTGGGA-AATCTTTGCGAAGCCT 975
Query 927 --TTCTCAAGAAAAAGA-TATTTGGTGTGCCTTGATTGCGATTGAGAAACGTGATGGTAT 983
|| |||| || |||| |||||||||||| |||||||| |||| ||| | | | ||
Sbjct 976 TTTTATCAA-AACAAGAGTATTTGGTGTGCGGTGATTGCGCTTGA-AAA-GCG-TAAAAT 1031
Query 984 TGATGAAGTTTGGGGAAAAATTGAGTGGGCTAGTATTGTGCTTACGGTTCCGT-GCTCAT 1042
||||||| |||||||||| || |||||||||||||||||||||||||||| | | ||||
Sbjct 1032 TGATGAAATTTGGGGAAAGGTTAAGTGGGCTAGTATTGTGCTTACGGTTCC-TAGATCAT 1090
Query 1043 ACGTTTTCTTG 1053
| |||||||||
Sbjct 1091 ATGTTTTCTTG 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5