BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327008

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G28288.1 | Symbols:  | Defensin-like (DEFL) family protein |...   361    2e-99


> AT5G28288.1 | Symbols:  | Defensin-like (DEFL) family protein 
| chr5:10276243-10276626 REVERSE LENGTH=255
Length=255

 Score =  361 bits (195),  Expect = 2e-99
 Identities = 236/256 (92%), Gaps = 2/256 (1%)
 Strand=Plus/Plus

Query  1    ATGGATATCATAAAGAGCATCATGACtttttttCTTGTAGTAATGTTTTCAATTTCGTTT  60
            |||||||||| ||||| |||| |||||||  ||||||||||| ||||| |||||| ||||
Sbjct  1    ATGGATATCACAAAGAACATCGTGACTTTACTTCTTGTAGTATTGTTTCCAATTTTGTTT  60

Query  61   TATAACAACAATGTTTTGGCATTTCCGGCGGGCGACCAATCGATATATGCTCGTTGCATT  120
            ||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct  61   TATTACAACAATGTTTTGGCATTTCCGGCGAGCGATCAATCGATATATGCTCGTTGCATT  120

Query  121  GGTCCATGTCCGAGGTATGCCGTATCTCATTGGTGTGAATATCAATGTTTAG-ATAGGAA  179
            |||||||||||||||||||||||  |||||||||||||| || ||||||| |  ||||||
Sbjct  121  GGTCCATGTCCGAGGTATGCCGTGCCTCATTGGTGTGAAAATGAATGTTT-GTCTAGGAA  179

Query  180  GTACATGGCAGGAGGAGAATGTGCTTTTATTGAAGGAGAAGGACCAGCACCACGATGTTG  239
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct  180  GTACATGGCAGGAGGAGAATGTGCTTTTATTGAAGGAGAAGGACCAACACCACGGTGTTG  239

Query  240  TTGCATTAACTTATGA  255
            ||||||||||||||||
Sbjct  240  TTGCATTAACTTATGA  255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5