BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327025
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28830.1 | Symbols: | calcium-binding EF hand family protei... 1266 0.0
> AT5G28830.1 | Symbols: | calcium-binding EF hand family protein
| chr5:10856791-10858668 FORWARD LENGTH=1259
Length=1259
Score = 1266 bits (685), Expect = 0.0
Identities = 893/990 (90%), Gaps = 27/990 (3%)
Strand=Plus/Plus
Query 1 ATGTCGAACTCGGCGGGATTAACGATCTTCGACGGTGATCTTCTTGGATCCATCGATCTC 60
||||||||| |||||||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 11 ATGTCGAACACGGCGGGATTAACGATTTTCGACGGTGATCTACTTAGATCCATCGATCTA 70
Query 61 AACCTACCGGAACTCCAACACGGCGTCACCGGAGCTCAGCTTCTCGAAATCTCTGAATCT 120
||||||||||||| ||||||| | |||||||||||||| |||||||| |||||||||||
Sbjct 71 AACCTACCGGAACACCAACACAGAGTCACCGGAGCTCAACTTCTCGAGATCTCTGAATCA 130
Query 121 AAGGTTTCTCAATCTCTCTCGGGACTCTCACTACCGCCACATCTCAAA-AACGCAGCGAT 179
|| ||||||||||||||||| || ||||||||||| |||||||||||| || |||||||
Sbjct 131 AAAGTTTCTCAATCTCTCTCTGGTCTCTCACTACCACCACATCTCAAAGAA-ACAGCGAT 189
Query 180 TTCTCGTGTTTCCGATGGAGATGACGTCAATTTCCGACGAACGGA-GTTCAATCAACAAC 238
||||| || |||||||||||| |||||| |||||| || || || ||||||| ||||||
Sbjct 190 TTCTCAAGTCTCCGATGGAGATCACGTCACTTTCCGTCGTAC-GATGTTCAATAAACAAC 248
Query 239 AAGCTTCTGAGAAACTCGGAGTTTTCTTCTCCGCCGTTGCCGATGCTCTTAAAGAGACTC 298
|||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| || |
Sbjct 249 AAGCTTCTGAGAAACTCGGAGTTTTCTTCTCCACCGTCGCCGATGCTCTCAAAGATACAC 308
Query 299 CAATTGTGGTGTCAATTTTGGATGGGACTATGTTGAAGATGTTTTTGGAGGACGAAGATG 358
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 309 CAATTGTGGTGTCAATATTGGATGGGACTATGTTGAAGATGTTTTTGGAGGATGAAGATG 368
Query 359 ATTTTGCAATGTTGGCAGAGAATTTGTTCACTGATTTGGATGAAGAAGATAAAGGAAAGC 418
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 369 ATTTTGCAATGTTGGCAGAGAATTTGTTCACTGATTTAGATGAAGAAGATAAAGGAAAGC 428
Query 419 TTTGTAAAAGCGAGATACGAAAAGCTCTTGTGCATATGGGTGTTGAAATGGGTGTTCCTC 478
||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 429 TTTGTAAGAGTGAGATACGAAAAGCTCTTGTACATATGGGTGTTGAAATGGGTGTTCCTC 488
Query 479 CACTCTCAGAATTTCCCATCTTAGATGACATTGTTAAGAAGCATGATGCTGATGGTGATG 538
||||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||
Sbjct 489 CACTCTCAGAATTTCCCATATTAGATGATATCATTAAGAAGCATGATGCTGATAGTGATG 548
Query 539 AAGAGCTTGGACAAGCACAATTTGCAGAATTATTGCAACCAGTTCTACAAGATATAGCAG 598
||||||||||||||||||||||||||||| || |||||| |||||||||||| |||||||
Sbjct 549 AAGAGCTTGGACAAGCACAATTTGCAGAACTACTGCAACAAGTTCTACAAGAAATAGCAG 608
Query 599 ATGTCCTTCATGAGAAACCAATAACCATTGTCC-AGAACGTTGAGATTTTCACTGGATCA 657
||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||
Sbjct 609 ATGTCCTTCATGAGAAACCAATAACTATTGTCCTA-AACGTTGAGATTTTCACTGGATCA 667
Query 658 AGGATTCATAAGATTCTGGGAGACGAGAAGAAACTCAAGTGTCTTGTAGAGAAAACGATT 717
||||||| ||||||||| | || ||||||| ||||||||||||||||||||||||||||
Sbjct 668 AGGATTCGTAAGATTCTTGCTGATGAGAAGACACTCAAGTGTCTTGTAGAGAAAACGATT 727
Query 718 TTGGAAGAGTCGAACGGAAAAG-GAT----GG--G-T-AATGACTTTGATAATAAAGAAT 768
|||||||||||||||||||||| || || | | || ||| |||||||||||||||
Sbjct 728 TTGGAAGAGTCGAACGGAAAAGAGAGCCAAGGATGGTTAAGGACGTTGATAATAAAGAAT 787
Query 769 GGAAAAGAGTTGGGATTGCCTCCGTTATCTTCAGATAACGAACAAGTGGCTCTTCTCTAT 828
|| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 788 GGGAAAGAGTTAGGATTGCCTCCGTTATCTTCAGAAAACGAACAAGTGGCTCTTCTCTAT 847
Query 829 GAGACCATATTTTCTCAGTTGAATAACAAAAAGAAAGAAACCGCTGATGCTTCTACAAAA 888
||||||||| |||||||||||||||||||| || ||| || |||||||||||
Sbjct 848 GAGACCATAATTTCTCAGTTGAATAACAAA--GA--GAA-----TG---CTTCTACAAAA 895
Query 889 GTGGAGTTTATGGATGCTCTAAAAGACATACTCAAGAGATTTGAGGACCTACTCGAAACC 948
| ||||||||||||||||||||| || ||||| |||| ||||||||| | ||||||||
Sbjct 896 GAGGAGTTTATGGATGCTCTAAAGGATATACTTAAGAAATTTGAGGAGTTGCTCGAAACA 955
Query 949 ACACCGGTATATTCTGCTACCAATCTCTAG 978
|||||||| | |||||||| ||||||||||
Sbjct 956 ACACCGGTGTTTTCTGCTATCAATCTCTAG 985
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5