BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327035
Length=4131
Score E
Sequences producing significant alignments: (Bits) Value
AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases | ch... 1570 0.0
> AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases |
chr5:26776994-26785104 FORWARD LENGTH=4575
Length=4575
Score = 1570 bits (850), Expect = 0.0
Identities = 1114/1244 (90%), Gaps = 7/1244 (1%)
Strand=Plus/Plus
Query 716 AAAA-GGAATTTGATTTGGGTGCTGATGGATCACTTC-TTTTTTACATTCTTGATGCTTA 773
|||| |||||||||||||| |||||| |||||||||| ||| || ||||||||| |||||
Sbjct 1000 AAAACGGAATTTGATTTGGATGCTGACGGATCACTTCGTTTCTT-CATTCTTGACGCTTA 1058
Query 774 CGAGGAGCCTTTTGGCGCTAGTAAGGGTATAATATATCTGTATGGGAAGGTTAAAACGGG 833
|||||| ||||||| || || | ||| | ||||||||||| |||||||||||||| |||
Sbjct 1059 TGAGGAGGCTTTTGGTGCGAGCATGGGCACAATATATCTGTTTGGGAAGGTTAAAATGGG 1118
Query 834 AGATACATACAAGAGTTGCTGTGCGGTAGTTAAGAATATCCAGAGATGTGTTTATGCTAT 893
|||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1119 AGATACTTACAAGAGTTGCTGTGTGGTAGTTAAGAATATCCAGAGGTGTGTTTATGCTAT 1178
Query 894 CCCAAATGATACCATCTTTCCTTCCCATGAAATAATGACT-CTCGAGCAAGAGGTGAAAG 952
||||||||| |||| ||||||||||||||| |||| | | |||||||||||||||||||
Sbjct 1179 TCCAAATGATTCCATATTTCCTTCCCATGAACTAATCA-TGCTCGAGCAAGAGGTGAAAG 1237
Query 953 AGTCTCGACTTTCTCCTGAATCCTTCCGAGGGAAGTTACATGAAATGGCATCCAAACTGA 1012
| |||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||
Sbjct 1238 ACTCTCGACTTTCTCCTGAATCCTTCCGTGGGAAATTGCATGAAATGGCATCAAAACTGA 1297
Query 1013 AGAAGGAAATTTCTCAGCAATTGTTACAACTCAATGTTTCAAATTATAGCATGGCACTTG 1072
| || |||||| ||||| |||||||||| |||||||||||||||| ||||||||| | ||
Sbjct 1298 AAAACGAAATTGCTCAGGAATTGTTACAGCTCAATGTTTCAAATTTTAGCATGGCGCCTG 1357
Query 1073 TCAAGAGAAACTATGCATTTGACAGGCCTGATGTGCCTGCTCGCGAACAATATGTTTTGA 1132
|||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1358 TCAAGAGAAACTATGCTTTTGAGAGGCCTGATGTGCCTGCTGGCGAACAATATGTTTTGA 1417
Query 1133 CGATAAATTATCCATTTAAGGATCCTCCACTTCCAGAAGACCTTAAAGGGGAGTCTTTTT 1192
|||||||||| |||||||||||| ||||||||||||||| |||||||| |||||||| |
Sbjct 1418 AGATAAATTATTCATTTAAGGATCGTCCACTTCCAGAAGATCTTAAAGGCGAGTCTTTCT 1477
Query 1193 GCGCTGTGCTCGGCTCTCATACCAGTGCTCTGGAGCTTTTTATCCTCAAAAGGAAGATCA 1252
|||| ||||||| ||||||||||||||| |||||| ||||||||| || ||||||||||
Sbjct 1478 CCGCTTTGCTCGGGTCTCATACCAGTGCTTTGGAGCATTTTATCCTTAAGAGGAAGATCA 1537
Query 1253 TGGGACCTTCATGGCTCAAAATTTCAATCTTTTCTGC-CACTTTAAAATCTCAACGAGTG 1311
||||||||| |||||||||||||||| ||| ||| | || | || || |||||
Sbjct 1538 TGGGACCTTGTTGGCTCAAAATTTCAAGCTTCTCTACTTGCTCT-CCTTCGGAAGGAGTG 1596
Query 1312 AGCTGGTGCAAGTCTGAGGTTACTGTTGAATCTCCCAAGGTTATCACTGTTTCAATTCCG 1371
|| |||||||||| ||||||||||||| |||||||||||| ||||||| ||| | || |
Sbjct 1597 AGTTGGTGCAAGTTTGAGGTTACTGTTCAATCTCCCAAGGATATCACTATTTTAGTTTCA 1656
Query 1372 GAAGAAAAAACGGTTCATCCTCCTGCTGTCATTACAGCCATTAACTTAAAGACCATAGTC 1431
|| ||||| |||||| ||||||||||| |||||||||| || |||||||| ||||||
Sbjct 1657 GAGGAAAAGGTGGTTCACCCTCCTGCTGTTGTTACAGCCATAAATTTAAAGACTATAGTC 1716
Query 1432 AATGAAAAGCAGAACATCAGCGAAATTGTTTCTGCGTCTGTTCTCTGCTTTCACAACGCC 1491
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1717 AATGAAAAGCAGAACATAAGCGAAATTGTTTCTGCATCTGTTCTCTGCTTTCACAACGCC 1776
Query 1492 AAGATTGATGTTCCAATGCCAGGTCCAGAAAGAAAGCGATCTGGTGTTCTGAGTCATTTC 1551
|||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 1777 AAGATTGATGTTCCAATGCCAGCTCCAGAAAGAAAGAGATCTGGTATTCTGAGTCATTTC 1836
Query 1552 ACTGTTGTCAGGAATCCTGAAGGAACCGGCTACCCAATTGGTTGGAAAAAAGAAGTGGCT 1611
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1837 ACTGTTGTTAGGAATCCTGAAGGAACCGGTTACCCAATTGGTTGGAAAAAAGAAGTGTCT 1896
Query 1612 GACAGAAATTCAAAGAACGGCTGCAGTGTTTTAAGTTTTGAAAACAGTGAAAGAGCATTG 1671
||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||
Sbjct 1897 GACAGAAATTCAAAGAACGGCTGCAATGTATTAAGTATTGAAAACAGTGAAAGAGCATTG 1956
Query 1672 CTGAACCGATTGTTTCTGGAGTTGAACGAATTAGACAGTGATATTCTTGTGGGACATAAT 1731
||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 1957 CTGAACCGATTGTTTTTGGAGTTAAACAAATTGGACAGTGATATTCTTGTGGGACATAAT 2016
Query 1732 ATATCAGGTTTTGATCTGGATGTCCTTCTCCAAAGAGCCCAGGTTTGCATAGTTAAGAGT 1791
|| |||||||||||||||||||| ||||| ||||| ||||||| ||||| |||| |||||
Sbjct 2017 ATTTCAGGTTTTGATCTGGATGTTCTTCTTCAAAGGGCCCAGGCTTGCAAAGTTCAGAGT 2076
Query 1792 AGCATGTGGTCGAAAATTGGCCGTCTCAAACGCTCTTTCAAGCCTAAGCTTAAAGGGAAC 1851
||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||| |||
Sbjct 2077 AGCATGTGGTCCAAAATTGGCCGACTCAAACGCTCTTTTATGCCTAAGCTTAAAGGAAAC 2136
Query 1852 ACTAATTTTGGGTCCGGAGCTACACCAGGGCTTATGTTTTGCATTGCTGGAAGACTCTTA 1911
| ||||| |||||| ||||||||||||||||| |||| ||| ||||||||||| |||||
Sbjct 2137 AGTAATTATGGGTCAGGAGCTACACCAGGGCTCATGTCTTGTATTGCTGGAAGGCTCTTG 2196
Query 1912 TGTGATATAGATCTATGTTCTCGTGACTTGTTGAAGCAGGACAG 1955
||||||| |||||| ||||||||||||||||||||| ||| |||
Sbjct 2197 TGTGATACAGATCTGTGTTCTCGTGACTTGTTGAAGGAGGTCAG 2240
Score = 1134 bits (614), Expect = 0.0
Identities = 809/904 (89%), Gaps = 10/904 (1%)
Strand=Plus/Plus
Query 2707 GGAAGGGAGATCCTGCAAAGAACCGTGGATTTTGTCCAGAATCATTTAAACCTAGAGGTG 2766
|||||||| ||||||||||||||||||||| |||||||||| |||||||| ||||||||
Sbjct 3067 GGAAGGGATATCCTGCAAAGAACCGTGGATCTTGTCCAGAACCATTTAAATCTAGAGGTA 3126
Query 2767 ATTTATGGTGACACGGATTCAATCATGATTCACAGTGGACTAGATGATATCGAAGAGGTC 2826
|| || |||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 3127 ATATACGGTGACACAGATTCAATCATGATTCACAGCGGACTAGATGATATTGAAGAGGTG 3186
Query 2827 AAAGCCATTGGAGCAAAAGTCATCCAAGAGGTCAATAAAAAGTATAGATGTCTGAAGATT 2886
||||||||| | ||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 3187 AAAGCCATTAAATCAAAAGTCATCCAAGAGGTCAATAAGAAGTATAGATGTCTAAAAATT 3246
Query 2887 GAACT-TGATGGCATATATAAGAGAATGCTTCTTCTTAGAAAAAAGAAGTATGCCGCCAT 2945
| ||| |||||||||||| |||||||||||||||||| |||||||||||||||| || |
Sbjct 3247 G-ACTGTGATGGCATATACAAGAGAATGCTTCTTCTTCGAAAAAAGAAGTATGCTGCTGT 3305
Query 2946 CAAGTTGCAGTTCAAGGACGGGAAGATTTGCGAGGAAATTGAAAGGAAAGGTGTGGACAT 3005
|||||||||||| ||||| |||||| ||||||||| |||||||| ||||||||||| ||
Sbjct 3306 CAAGTTGCAGTTTAAGGATGGGAAGCCTTGCGAGGACATTGAAAGAAAAGGTGTGGATAT 3365
Query 3006 GGTTCGTCGAGATTGGAGCTTGCTCTCCAAGGAAATTGGAGATGTATGCTTG-GCTAAAA 3064
||||||||||||||||||||| ||||| |||||||| |||||| ||||| || | |||||
Sbjct 3366 GGTTCGTCGAGATTGGAGCTTACTCTCGAAGGAAATAGGAGATTTATGCCTGAG-TAAAA 3424
Query 3065 TCTTGTGTGGAGGGTCGTGTGAGGATGTTGTTGAAGCAATTCATAACGAACTTATGAAGA 3124
|||||| |||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3425 TCTTGTATGGAGGATCCTGTGAGGATGTTGTTGAAGCAATTCATAACGAACTAATGAAGA 3484
Query 3125 TAAAAGAGGAAATGAGAAATGGGCAAGTTGCACTTGAGAAGTATGTCATCACCAAGGCAT 3184
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 3485 TAAAAGAGGAAATGAGAAATGGGCAAGTTGCTCTTGAGAAGTATGTCATCACCAAGACAT 3544
Query 3185 TGAGTAAGTCACCAGAAGCTTATCCAGATTCCAAAAGCCAACCACACGTTCAGGTCGCGC 3244
||| ||| | || | |||||||||||||||||||||||||||||||||||| || || |
Sbjct 3545 TGACTAAACCGCCTGCAGCTTATCCAGATTCCAAAAGCCAACCACACGTTCAAGTTGCAC 3604
Query 3245 TCAGAATGAGGCAACGTGGTTATAAAGAAGGTTTTAGTGCTAAGGATACCGTACCATATA 3304
|||||||||||||||||||||||||||||||||| | |||||||||||| ||||| ||||
Sbjct 3605 TCAGAATGAGGCAACGTGGTTATAAAGAAGGTTTCAATGCTAAGGATACTGTACCGTATA 3664
Query 3305 TAATCTGCTATGAACAGGGTAATCCTAGCT-TAGCAAGCTCAGTAGGGATCGTCGAACGT 3363
||||||||||||| ||||||||| |||||| | || || |||| ||| || | |||||||
Sbjct 3665 TAATCTGCTATGAGCAGGGTAATGCTAGCTCT-GCTAGTTCAGCAGGAATTGCCGAACGT 3723
Query 3364 GCCAGGCATCCGGCTGAGGTGAAATCAGAAGACAGCAGATGGTTGGTTGACATAGATTAC 3423
|| |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3724 GCTAGGCATCCTGATGAGGTGAAATCAGAAGGCAGCAGATGGTTGGTTGACATAGATTAC 3783
Query 3424 TACTTGGCACAGCAGATTCATCCGGTGGTATCTCGTTTATGCGCAGAGATTCAGGGCACA 3483
||||| ||||| ||||||||||||||||| |||||| |||||||||||||||| || |||
Sbjct 3784 TACTTAGCACAACAGATTCATCCGGTGGTGTCTCGTCTATGCGCAGAGATTCAAGGAACA 3843
Query 3484 AGTCCTGAGAGGT-TAGCCGAGTGTTTAGGACTTGACCCATCAAAGTATCGAAGCAGATC 3542
|||||||| | || |||| || |||||||||||||||||||||||||| ||||||| |||
Sbjct 3844 AGTCCTGA-ACGTCTAGCTGAATGTTTAGGACTTGACCCATCAAAGTACCGAAGCAAATC 3902
Query 3543 AAAC-ATTACTACGGGCAGTGATCCTTCTACATCCCTCTTGTTTGCTACGAGCGATGAAG 3601
|||| || |||| |||||||||| ||||| |||||||| || || || ||||||||||
Sbjct 3903 AAACGATG-CTACAAGCAGTGATCCCTCTACCTCCCTCTTATTCGCAACAAGCGATGAAG 3961
Query 3602 AAAG 3605
||||
Sbjct 3962 AAAG 3965
Score = 913 bits (494), Expect = 0.0
Identities = 688/777 (89%), Gaps = 31/777 (4%)
Strand=Plus/Plus
Query 1943 TGAAGCAGGACAGGAAAGAGATATCGCCTAATGATATTCCCAAAATGTTTCAGTCATCGA 2002
|||| | |||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 2273 TGAACCGGGACAGGAAAGAGATAGCGCCTAATGATATTCCCAAAATGTTTCAGTCATCCA 2332
Query 2003 AAACACTTGTGGAACTTATTGAACGTGGTGAGA-GAGATGCATGGTTATCCATGGAGCTC 2061
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 2333 AAACACTTGTGGAACTTATTGAATGTGGTGAGACG-GATGCATGGTTATCCATGGAGCTC 2391
Query 2062 ATGTTTCATTTAAGTGTTCTTCCTCTCACTCTCCAGCTTACCAACATAAGTGGCAATCTC 2121
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2392 ATGTTTCATCTAAGTGTTCTTCCTCTCACTCTCCAGCTTACTAACATAAGTGGCAATCTT 2451
Query 2122 TGGGGGAACACTCTTCAGGGAGCCAGGGCGCAAAGAAAT-GAATACTACTTACTACATAC 2180
|||||||| || ||||| ||||||||||| || |||| | ||||||||||||||||||||
Sbjct 2452 TGGGGGAAAACACTTCAAGGAGCCAGGGCACAGAGAA-TCGAATACTACTTACTACATAC 2510
Query 2181 ATTCCACTCGAGAAAGTACATTCTCCCAGACAAAATTTCGCAACATATGAAGGAAAGAAA 2240
||||||||||| ||||| ||||||||| ||||||||||| |||| ||||||||||| |||
Sbjct 2511 ATTCCACTCGAAAAAGTTCATTCTCCCTGACAAAATTTCACAACGTATGAAGGAAATAAA 2570
Query 2241 GTCATCAAAAAGAAGAATCAATCATGGTCCAGAAGACCACAATGTAGATGAATTGGATGT 2300
|||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||
Sbjct 2571 GTCATCAAAAAGAAGAATGGATTATGCTCCAGAAGACCGCAATGTAGATGAATTGGATGC 2630
Query 2301 TGACTTGGCTTTGGAAAACGATC-----A-GGGCAACAAAACAAAAAAGGGTCCAGCCTA 2354
|||| || ||||||| || |||| | ||||| |||||||||||| |||||||||||
Sbjct 2631 TGACCTGACTTTGGAGAATGATCCGTCTAAGGGCAGCAAAACAAAAAAAGGTCCAGCCTA 2690
Query 2355 CGCTGGTGGATTGGTCTTGGAGCCAAAGAAAGGCTTATATGACAAATATGTGTTGCTTCT 2414
|||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 2691 CGCTGGTGGACTGGTCTTGGAGCCAAAGAGAGGCTTATATGACAAATATGTCTTGCTTCT 2750
Query 2415 CGATTTCAGTAGTCTTTACCCGTCTATTATACAGGTTAGTAGACCGAATATAATATCTGT 2474
||||||| |||||||||||| ||||||||||||| | || | ||||| ||||
Sbjct 2751 GGATTTCAATAGTCTTTACCCTTCTATTATACAGGA-A-TA--C--AATAT-----CTGT 2799
Query 2475 TTCACGACTATATCACGATCAGAAGACGGAGTTCCTCGTTTACCCTCTAGTCAGACACCT 2534
|| ||||||||| ||||||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 2800 TTTACGACTATACCACGATCAGAAGATGGAGTTCCTCGTTTACCTTCGAGTCAGACACCT 2859
Query 2535 GGAATTCTTCCCAAGGTATTTGATGGAACATTTGGTCAGTATAAGGAAATGCGTCAAACT 2594
||||||||||| ||| | | |||||||||||||||||||||||||||| |||||||| |
Sbjct 2860 GGAATTCTTCCAAAG-T-T--GATGGAACATTTGGTCAGTATAAGGAAAAGCGTCAAATT 2915
Query 2595 AAAGATGAAT--G-ATA--G-TCTCAAGTGCCGGGAGCTTGACATTCGGCAGGAGGCATT 2648
||||||||| | | | | |||||||| | |||||||||||||||| ||| |||||||
Sbjct 2916 AAAGATGAAGAAGGAAACAGGTCTCAAGTACTGGGAGCTTGACATTCGACAGCAGGCATT 2975
Query 2649 AAAGCTCACAGCCAATAGTTTCTATGGATATCTTGGGTTTTCTAATTCAAGATTCTA 2705
|||||||||||||||||| | ||||| | ||| |||||||||||||||||||||||
Sbjct 2976 GAAGCTCACAGCCAATAGTATGTATGGCTGTCTGGGGTTTTCTAATTCAAGATTCTA 3032
Score = 597 bits (323), Expect = 3e-169
Identities = 441/499 (88%), Gaps = 4/499 (1%)
Strand=Plus/Plus
Query 3635 CTGATACAGAGGAATCTGATTCTATATTCTGGCTTAAACGGCATTGCCTGAAATGCGAAG 3694
|||| ||||||||||||||||| | |||||||||||||| |||||||| |||||| ||
Sbjct 4079 CTGAAACAGAGGAATCTGATTCCACATTCTGGCTTAAACTGCATTGCCCGAAATG-TCAG 4137
Query 3695 CA-GAAGGTAGCACGAGAAGAATATCCCCTGCAATGATAGCTAACCAGGTGAAAAGGCAG 3753
|| |||| ||||||| ||| |||||||||||||||||||||||||||||| ||||| |||
Sbjct 4138 CAGGAAGATAGCACGGGAATAATATCCCCTGCAATGATAGCTAACCAGGTAAAAAGACAG 4197
Query 3754 ATTGATGGGTTTGTGTCAATGTACTACAAAGGCATAATGATGTGTGACGATGAGTCTTGC 3813
|| ||||| |||||||||||||||||||||||||||||| ||||||| || ||||| |||
Sbjct 4198 ATCGATGGATTTGTGTCAATGTACTACAAAGGCATAATGGTGTGTGAAGACGAGTCATGC 4257
Query 3814 AAATACACGACACGCAGCCCCAACTTTCGTCTGCTCGGTGACCGTGAACGGGGAACAGTT 3873
|| |||| || ||| ||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 4258 AAGCACACAACCCGCTCCCCCAACTTTCGTCTACTCGGTGAACGTGAACGGGGGACAGTT 4317
Query 3874 TGCCCAAACTATCCTAACTGTAATGGAACCTTCTTAAGAAAGTACACTGAAGCAGACTTG 3933
||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct 4318 TGCCCAAACTATCCTAACTGTAACGGAACCCTCTTACGAAAGTACACTGAAGCAGACTTG 4377
Query 3934 TACAGGCAGCTATCCTACTTTTGCCATATCTTAGACACACAATACTCTCTAGAAAAGATG 3993
|||| ||| || || ||||| ||||| |||||||||||||||| |||| |||||||||||
Sbjct 4378 TACAAGCAACTGTCATACTTCTGCCACATCTTAGACACACAATGCTCTTTAGAAAAGATG 4437
Query 3994 GATGTTGGTGTCAAAATTCAAGTAGAGAAAGCAATGACGAAGATAGGACCTGCGGTTGAG 4053
|||||||| || | ||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 4438 GATGTTGGCGTGAGAATTCAAGTAGAGAAAGCAATGACGAAGATAAGACCTGCGGTTAAG 4497
Query 4054 TCAGCAGCATCCATGGCTCGAAGTA-TACGAGACCGCTGTGCCTACGGATGGCTGCAACT 4112
||||||||| | || ||||||||| || ||||||| ||||| || |||||| |||||||
Sbjct 4498 TCAGCAGCAGCAATCACTCGAAGTAGTA-GAGACCGGTGTGCTTATGGATGGATGCAACT 4556
Query 4113 GACAGACATAGCCGTTTGA 4131
|||||||||| | |||||
Sbjct 4557 CACAGACATAGTCATTTGA 4575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 205885134072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5