BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327036
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT4G06534.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1229 0.0
> AT4G06534.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 22 Blast hits to 22
proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:3356870-3358087 FORWARD LENGTH=1218
Length=1218
Score = 1229 bits (665), Expect = 0.0
Identities = 831/910 (91%), Gaps = 16/910 (2%)
Strand=Plus/Plus
Query 1 ATGCTTCGTTGGGCCCATTTAACGGCAGGGATTC-TCTCCGTTGTCGTCCTCTCTTCTCT 59
|||||||||||||||||||| || ||||||| || |||||||||| || |||||||||||
Sbjct 1 ATGCTTCGTTGGGCCCATTTCACCGCAGGGA-TCGTCTCCGTTGTTGTGCTCTCTTCTCT 59
Query 60 CCTCGTAGTCTTCCTCCGTCGCTGGTGCTGTCTCCGCCGATCAGAGATCACCACAA-CC- 117
||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 60 CCTTGTAGTCTTCCTCCGTCGCTGGTGCTGTCTCCGCCG---AGAGATCACCACAACCCT 116
Query 118 ----GCAGCCAGTCCCATTCGGAGCAATAGCTTCCAGGCTAGAATCTCAAAGCTCCACCA 173
|| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 117 TAAAGCGGCCAGTCCCATTCGAAGCGATAGCTTCCAGGCTAGAATCTCAAAGCTCCACCA 176
Query 174 GACGAGCCTCATCCACCAGCTAGATACCTCCGACATCAAGCGCAGAGGAAATATTAAAAA 233
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 177 GACGAGCCTCATCCACCAGCTAGATACTTCCGACATCAAGCGTAGAGGAAATATCAAAAA 236
Query 234 CTATCCAATCTCCAGAAGCGCCACTACTGGAGGATTCCCGTCGAAACCTGGCCTATTCAT 293
|||| |||||||||||| ||||||| | ||||||||||| ||||||||||||||||||||
Sbjct 237 CTATTCAATCTCCAGAACCGCCACTGCCGGAGGATTCCCATCGAAACCTGGCCTATTCAT 296
Query 294 CTGGACGGATCACCCGGCTTTGGTGACCGAAGCAGTGGATAATGGGTGGACAAGGTTCGG 353
|||||| || || |||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 297 CTGGACAGACCATCCGGCTTTGGTGACCGAAGCGGTCGAAAATGGGTGGACAAGGTTCGG 356
Query 354 ATTCGCTCTCCATGAACCTGCTCCTTTGGTCACCGGGACCTCACCAGGGTCGGTTCTTCT 413
||||||| |||||||||| ||||| ||||| | |||| |||| || ||||| ||||||||
Sbjct 357 ATTCGCTGTCCATGAACCGGCTCCATTGGTGAGCGGGGCCTCCCCGGGGTCAGTTCTTCT 416
Query 414 AGGGCTTTGCACGACGGCAGGAAGCGAAGATCCTGGTGTTGTAATAACATGGGAAGTGTC 473
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 417 AGGGCTTTGCACCACGGCAGGAAGCGAAGATCCTGGTGTTGTAATCTCATGGGAAGTGTC 476
Query 474 AAACGGCTCTGTTGATTTCACACAGACGATCAAGTTTAATCAATCGTTCAAGGAGACGGT 533
||||||||| || || |||||||| |||||||| ||||||||| ||||||| ||||||||
Sbjct 477 AAACGGCTCCGTGGAATTCACACAAACGATCAAATTTAATCAAGCGTTCAACGAGACGGT 536
Query 534 CAACGCAATAAAACCCTTGATGGTTCTCCGAGGAGCATTACCACTTCCCGGACCACAACT 593
|||||||| ||||| ||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 537 CAACGCAAAAAAACACTTGATGATTCTCCGAGCAGGTTTACCACTTCCCGGACCACAACT 596
Query 594 CGTAAGTTCTGCTTTCCCACAAGAGGCTTACTTTGAAATTACAATCCTTGAAATCACCCA 653
| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 597 CATAAGTTCTGCTTTCCCACAAGAGGCTTACTTTGAAATAACAATCCTCGAAATCACCCA 656
Query 654 ACGCCACCAC-GGTGAGGGTGGTGACGTAAGTTGTGAATTAGTGGAAGGTGAAAAAACTA 712
|| |||| | ||||||| |||||||||| ||||||| ||||||||||||||||||||||
Sbjct 657 ACACCAC-AGTGGTGAGGCTGGTGACGTAGGTTGTGACTTAGTGGAAGGTGAAAAAACTA 715
Query 713 AGTTGTTCAAGAGCCAAGGACTAAAACTTGTCCAAAGAAGAGAATGGGATGGAGAAAACG 772
|||||||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||
Sbjct 716 AGTTGTTCAAGAACCAAGGACTAAAACTTGTCAAAAGAAGTGAATGGGATGGAAAAAACG 775
Query 773 AAGAAGCCGTTTTGTCTCTAGGACTAGCGACTGGTGGTTCCTTCGGTGCCGCCGGCGAAA 832
|||||||||||||||||||||||||||||||||||||||||||||| || | ||||| |
Sbjct 776 AAGAAGCCGTTTTGTCTCTAGGACTAGCGACTGGTGGTTCCTTCGGCGC-G--GGCGAGA 832
Query 833 CACGACTACCAGGAAAATTCCCGGCTTCTATTGGGTTCCAATCGAACGGTGCTATCTATC 892
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 833 CACGACTACCAGGAAAATTCCCGGCTTCTATTGGGTTCCAATCGGACGGTGCCATCTATC 892
Query 893 TCGATGGTAC 902
||||||||||
Sbjct 893 TCGATGGTAC 902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5