BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327037
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT4G06598.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 1037 0.0
> AT4G06598.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Basic-leucine zipper (bZIP) transcription factor family
protein (TAIR:AT1G58110.2); Has 392 Blast hits to 388 proteins
in 30 species: Archae - 0; Bacteria - 0; Metazoa - 15;
Fungi - 8; Plants - 363; Viruses - 0; Other Eukaryotes -
6 (source: NCBI BLink). | chr4:3663485-3665981 FORWARD LENGTH=1658
Length=1658
Score = 1037 bits (561), Expect = 0.0
Identities = 666/718 (93%), Gaps = 2/718 (0%)
Strand=Plus/Plus
Query 1 ATGGCAAGTTCCAAGGGGTCTCAGAATCTTAGAAATCTGGGATGCACTGGGAAGCAGGCT 60
||||||||||| |||||||||||||||| ||||||||||||||||| |||||| || |||
Sbjct 133 ATGGCAAGTTCAAAGGGGTCTCAGAATCATAGAAATCTGGGATGCAATGGGAAACAAGCT 192
Query 61 TTACTTCCTCCAAAAAGTCCGTTTACGGGTGGTCCAACGTTTTGTTCAGATTTTGTTCCA 120
||||| ||||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 193 TTACTGCCTCCGAAAAGTCCGTTTACGGGTGGTCCAACGTTTAGTGCAGATTTTGTTCCA 252
Query 121 AGTAGTGTGATTGGATCCAAGGCTGTTCAGAAGCTTGGAGAAGGAAATGTCAATCATCAT 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 253 AGTAGTGTGATTGGATCCAAGGCTGTTCAGAAGCTTGGAGAAGGAAATGCCAATCATCAT 312
Query 181 CGAACTTCATCTGAGAGTTTTCTGATTGAGGAACAGCCTTCTTGGCTTGACGACCTTCTC 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 313 CGAACTTCATCTGAGAGTTTTCTTATTGAGGAACAGCCTTCTTGGCTTGACGATCTTCTC 372
Query 241 AACGAACCCGAGACACCTGTACGGAAAGGAGGTCATCGACGGTCATCAAGTGATTCATTT 300
|||||||| || |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 373 AACGAACCTGAAACACCTGTACGGAAAGGAGGGCATCGACGGTCATCGAGTGATTCATTT 432
Query 301 GCATATGTAGATGTCCCTGTTGGTTTTGATGTGGATTACACACTTTGGGATGGTGGTAGA 360
|||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 433 GCATATGTAGATGTTCCTGTTGGTTTTGATGTTGATTACACGCTTTGGGATGGTGGTAGA 492
Query 361 TATAATAACAATAGCAGTTTCTCTGCTCACGCCAGAGGTCCCAAGGAGTCTGATTACCTT 420
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 493 TATAATAACAATAATGGTTTCTCTAATCACGTTAGAGGTCCCAAGGAGTCTGATTACCTT 552
Query 421 AGAAGCCAGCCCGTCCCCTTCTACCCTTCAGCTCATTTGCCCAAACAGAAAATGAGAACA 480
||||||||||| || || ||||||||||||||||||||| ||||||||||||| ||| |
Sbjct 553 AGAAGCCAGCCTGTTCCTTTCTACCCTTCAGCTCATTTGTCCAAACAGAAAATAAGACCG 612
Query 481 TGGGATTCATTATCAGATTCCGGTGCTCGCCCAAACAGTAGTTCTGGTTGTTTGGAGAGC 540
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 613 TGGGATTCATTACCAGATTCCGGTGCTCGCCCGAACAGTAGTTCTGGTTGTTTGGAGAGT 672
Query 541 AGCCCTATCACAAGATCAGGGTCATCTGGTAGCCTACATGATGCAGAGAAGGCTTATTGT 600
||| ||||||||||||||||||| ||||||||||||| |||| |||| |||||||||| |
Sbjct 673 AGCTCTATCACAAGATCAGGGTCTTCTGGTAGCCTACGTGATACAGAAAAGGCTTATTCT 732
Query 601 GCTGCTGACGGCAAGAAAGATTTCATAAACAATTTCTCAAAGTCGTC-TTCCGAAAAAAG 659
|||||||| ||||||||||||||||||| |||||| |||||||||| ||| |||||| |
Sbjct 733 GCTGCTGATAGCAAGAAAGATTTCATAAATAATTTCGCAAAGTCGTCATTC-GAAAAACG 791
Query 660 GGATAATTCTCTGGCTAAGTCTGTTACCTCCGAGGCTGATACGAAACGTGCTAGACAG 717
||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 792 GGATAATCCTCTGGCTAAGTCTGCTACTTCCGAGGCTGATACGAAACGTGCTAGACAG 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5