BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327041
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT4G06676.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Etoposide... 1502 0.0
> AT4G06676.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Etoposide-induced
2.4 (InterPro:IPR009890); Has 264 Blast hits to 262
proteins in 100 species: Archae - 0; Bacteria - 0; Metazoa
- 130; Fungi - 16; Plants - 79; Viruses - 0; Other Eukaryotes
- 39 (source: NCBI BLink). | chr4:3898865-3901990 FORWARD
LENGTH=1497
Length=1497
Score = 1502 bits (813), Expect = 0.0
Identities = 914/964 (95%), Gaps = 2/964 (0%)
Strand=Plus/Plus
Query 1 ATGAGATCAAAATCGAAGCAGGTGTTGTTACTATGGCTTTAGGGTTTCCGAGAAGCTTGT 60
||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 134 ATGAGATCAAAATCGAAGCAGGTGTTGCTACTATGGCTTGAGGGTTTTCGAGAAGCTTGT 193
Query 61 TCTCTTCACCGTGTTGTCATTCTCTGTCACAGGTCGAGAAAGCTACTATTACGAACTGGG 120
|||||||||||||||||||||||||||| ||||||||||||||| || ||| ||||||||
Sbjct 194 TCTCTTCACCGTGTTGTCATTCTCTGTCTCAGGTCGAGAAAGCTTCTCTTAAGAACTGGG 253
Query 121 CAGTGTTTTCTTTTGAATGGTTTGATTTTCTTAGGAAGTTTAGGTGTGTTTAAGTGGTTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 CAGTGTTTTCTTTTGAATGGTTTGATTTTCTTAGGAAGTTTAGGTGTGTTTAAGTGGTTT 313
Query 181 ATAGATCCAGCCCTTCAGTGGATATTACCTGATCAGTGCTCTCCCCTCACTTCTCAAGAA 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 ATAGATCCATCCCTTCAGTGGATATTACCTGATCAGTGCTCTCCCCTCACTTCTCAAGAA 373
Query 241 TTTTGTTCGTATGGTGGATTTTATGCCTTTCTACGTGGTGGACTTGTGCAGCTCTTTTAC 300
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 374 TTTTGTTCGTATGGTGGATTTTACGCCTTTCTACGTGGTGGACTTTTGCAGCTCTTTTAC 433
Query 301 GTTTTTTGGTTCTATCCTCTGTACATGCTCAGCTTCATCTTGAGTAACATCTGGTATAAT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GTTTTTTGGTTCTATCCTCTGTACATGCTCAGCTTCATCTTGAGTAACATCTGGTATAAC 493
Query 361 GATATTGCAAAACATGGGTTCGAGGCAATTGAAAAATCTGACATAAGCTCAGCAGAAGCA 420
||||||||||| ||||| |||||||||||||| | ||||||| ||| |||||| ||||||
Sbjct 494 GATATTGCAAAGCATGGATTCGAGGCAATTGAGATATCTGACTTAAACTCAGCTGAAGCA 553
Query 421 TTAAGACAAGGTGAAGCTCCGGCGTCACTGAAC-TCGGCAAATGCTGAAAGGCCTTCTGG 479
||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||||
Sbjct 554 TTAAGACAAGGTGAAGCTCTGGCGTCCCTGAATAT-GGCAAATGCTGAAAGGCCTTCTGG 612
Query 480 TCTTGGAGGGGTGATGATCGGTATTGGAGAGCAGGTGTATTCAATACTTCTCCTGACAtt 539
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 613 TCTTGGAGGGGTGATGATCGGTATAGGAGAGCAGGTGTACTCGATACTTCTCCTGACATT 672
Query 540 tttttttCTGGAGGTTTATGTTGTTGGTGTTATACCATATATCGGGAAGATACTGAATTT 599
||||||||| ||||||| ||||||||||||||||||||| || ||||||||| |||||||
Sbjct 673 TTTTTTTCTTGAGGTTTGTGTTGTTGGTGTTATACCATACATTGGGAAGATATTGAATTT 732
Query 600 CTTACTTCTTTCATGGATGTATGCCTATTATTGTTACGAATATAAATGGAACTTCTCGGG 659
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 733 CTTACTTCTTTCATGGATGTATGCCTACTATTGTTACGAATATAAGTGGAACTTCTCGGG 792
Query 660 GATTCCTCTGGACAAAAGGCTAGACTTCTTTGAATCTAACTGGGCATTCTTTACTGGTTT 719
|||| ||||| | |||||||| ||||||||| |||||||||||||||||||| |||||||
Sbjct 793 GATTTCTCTGAAGAAAAGGCTGGACTTCTTTCAATCTAACTGGGCATTCTTTGCTGGTTT 852
Query 720 TGGAAGCCCCTGCGTGTTGGCCATTTTCTTTCTCTCGCCGCTTGTGAGCGGAGCGCTTAT 779
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 853 TGGAAGCCCCTGCGTGTTGGCCATTTTCTTTCTCTCGCCTCTTGTGAGCGGAGCGCTTAT 912
Query 780 GGCCATCTTGTTTCCATTGTTTGTTTTAACTGCTACAGGATCAGGACCTGAAAAATCGAT 839
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 913 GGCCATCTTATTTCCATTGTTTGTCTTAACTGCTACAGGATCAGGACCTGAAAAATTGAT 972
Query 840 TGGGGCCCCGAGAAGAACATGGAAATGTGCAGGTTTAGGGAGGCTTCCAATATTCTATGT 899
|||||||||||||||||| |||||||||||||||||||| | |||||||||||||||| |
Sbjct 973 TGGGGCCCCGAGAAGAACGTGGAAATGTGCAGGTTTAGGAAAGCTTCCAATATTCTATAT 1032
Query 900 AGCTGACACTCTCTCGATGTTGGCGTTGTCTATCTTCCGGTTGGAGTCCCCGCACGAGAT 959
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1033 TGCTGACACTCTCTCGATGTTGGCGTTGTCTATCTTCCGGTTGGAGTCCCCTCACGAGAA 1092
Query 960 TTAA 963
||||
Sbjct 1093 TTAA 1096
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5