BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327082

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08280.1 | Symbols:  | Thioredoxin superfamily protein | chr...   518    2e-146


> AT4G08280.1 | Symbols:  | Thioredoxin superfamily protein | chr4:5230326-5232196 
FORWARD LENGTH=791
Length=791

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 348/381 (91%), Gaps = 3/381 (1%)
 Strand=Plus/Plus

Query  1    ATGGCGGCAGCGATATCAGCGACTTTGGTGTTCGCTGCAAGACGACGTCCTTTGGTCTGT  60
            ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct  20   ATGGCAGCAGCGATATCAGCGACTTTGGTATTCGCTGCAAGACGACGTCCATTGTTCTGT  79

Query  61   AG-TT-T-ATCATCGTCTTCTTCCAAACCAAACACGAGAAAGCTTGTTCTTTACTCCAAA  117
            || || | ||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct  80   AGCTTATCATCATCGTCTTCTTCGAAACCAAACACGAGAAAGCTTGTTCTATACTCCAAA  139

Query  118  CCAGGTTGTTGTCTCTGCGATGGTCTTAAAGAGAAGCTTAACGCTGCTTTCTCTCTCTCC  177
            || |||||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct  140  CCTGGTTGTTGCCTCTGCGATGGTCTTAAAGAGAAGCTTCACGCTGCCTTCACTCTCTCC  199

Query  178  TCTGGTTCTGATTCACTCAACGACGTTACTCTTCAGGTGAGGGATATCACTACAAATCCC  237
             | ||| ||||||||||||||||||||||||||||||| || ||||| ||||| ||||||
Sbjct  200  ACCGGTCCTGATTCACTCAACGACGTTACTCTTCAGGTAAGAGATATAACTACGAATCCC  259

Query  238  GAGTGGGAAAGAGCGTATCAGTATGAGATACCGGTCTTGACTAAAGAAAATTCTGATGGC  297
            ||||||||| |||||||||||||||||||||| || ||| ||||||| ||||||||||| 
Sbjct  260  GAGTGGGAACGAGCGTATCAGTATGAGATACCAGTGTTGGCTAAAGAGAATTCTGATGGG  319

Query  298  AAAGAGGAAGTTTTGCCGAGGTTATCTCCACGTTTAAGTGCGGAAATCATACAGAAGAAA  357
            |||||||||||||| |||||||||||||||||||||||||| ||| |||| |||||||| 
Sbjct  320  AAAGAGGAAGTTTTACCGAGGTTATCTCCACGTTTAAGTGCAGAACTCATTCAGAAGAAG  379

Query  358  CTACTTGCTGCCTTTAGATGA  378
            ||||||||||||||||| |||
Sbjct  380  CTACTTGCTGCCTTTAGTTGA  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5