BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327097
Length=1710
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08550.1 | Symbols: | electron carriers;protein disulfide o... 1999 0.0
> AT4G08550.1 | Symbols: | electron carriers;protein disulfide
oxidoreductases | chr4:5444345-5446891 FORWARD LENGTH=1980
Length=1980
Score = 1999 bits (1082), Expect = 0.0
Identities = 1462/1640 (89%), Gaps = 48/1640 (3%)
Strand=Plus/Plus
Query 76 GAAGAGTTTTCTCGTAAACCGGTTGACGAAATCGAGGAGATGATGGAGGATAATGAGGAT 135
||||||||| ||||||||||||||| ||||||| || ||||| || || |
Sbjct 166 GAAGAGTTTACTCGTAAACCGGTTGTCGAAATC--------GA-GGAGG--AA-GA-G-- 210
Query 136 GAGGAGATGGAGTCTATAGATATTCATGAAG-AG--GAAGGAGACAAGATTGTTACTATG 192
||||||||||||||||||||||||||||||| || |||||||| || | ||| | |
Sbjct 211 GAGGAGATGGAGTCTATAGATATTCATGAAGAAGAAGAAGGAGATAATAACGTTTCCCTT 270
Query 193 GATGAGATAATGTCTGTAGATAGTGA-TGATGATGATAG-TGAGAGTTCTGCTGA-ATCA 249
|||||||||||||||||||||||| | |||||||||| | ||| || || || ||
Sbjct 271 GATGAGATAATGTCTGTAGATAGT-AGTGATGATGAT-GATGATAG---TG-AGAGTTC- 323
Query 250 AACGATGAAATAACGAAAGCTCGTGAAGAATCGGTTGATGATCGCAGCGGAATTTCTCAC 309
|| |||||||||||||||| |||||||| | |||| |||| | | | ||| | |
Sbjct 324 --CGCTGAAATAACGAAAGCTTGTGAAGAAACTGTTGTTGAT-G-AAC-GAA--GCGGA- 375
Query 310 CACTCATCACCGGAATCAAATTCATCAACTTCTTCTGCTTGGACAGAGAAAGCAGCTGCG 369
| | ||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 376 -A-T-ATCACAAGAATCTAATTCATCAACTTCTTCTGCATGGACAGAGAAAGCAGCGGCG 432
Query 370 ATCAAGAACTTTGTTAGAGTGAAGAGCGAAGTTGCGGTACATACATTGATTCGTCGACTT 429
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||
Sbjct 433 ATCAAGAACTTTGTTAGAGCGAAGAGCGAAGTTGCGGTACATACAATGATTCGTCGGCTT 492
Query 430 TCCGGGAAACTAAGTGTTGACAATGCAGCTCATGGTACTAGAGATGATGAGGTGAAATCA 489
|| || ||||||||| ||||||||||||||||||| |||| | | ||||| || |
Sbjct 493 TCTGGTAAACTAAGTATTGACAATGCAGCTCATGGGACTA-A-A-GATGA--TG--A--G 543
Query 490 GTGGACTCTCCTAAAACAGAAGGAAAGTCTATGTGGAATCCTTTAAGCTATTTAAAGATG 549
||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 544 GTGGAATCTCCTAAAACAGAAGGAAAGTCTTTGTGGAATCCTTTAAGCTATTTGAAGATG 603
Query 550 ATGCAGAACGACGATGATTCGGTTGATACAGAAGAAGAGGTAGCATTGGAGCCTGTAGTG 609
||||| |||||||| |||| |||| ||| |||||| ||| || || ||||||||||||
Sbjct 604 ATGCAAAACGACGAAGATTTGGTTTATAGAGAAGAGGAGACAGTGTTTGAGCCTGTAGTG 663
Query 610 ATGAAAGGTAGGATTATATTGTATACAAGACTAGGGTGTGAGGAGTGCAGAGAATGTAGG 669
||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||
Sbjct 664 ATGAAAGGTAGGATTATATTGTATACAAGACTAGGATGTGAGGAATGCAGAGGATGTAGA 723
Query 670 TTGTTTTTGCATGAAAAGAGGTTAAGATATGTCGAGATTAACATCGATATTTACCCGTCA 729
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 724 TTGTTTTTGCATGAAAAGAGGCTAAGATATGTCGAGATTAACATCGATATTTACCCGACA 783
Query 730 AGAAAACTGGAGTTGGAAAAGATTTGTGGCGGAGATGTCGCTCCTAAGGttttttttAAT 789
||||| ||||| | ||||||||| |||| |||||||| | ||||| ||| || ||||||
Sbjct 784 AGAAAGGTGGAGCTAGAAAAGATTAGTGGAGGAGATGTTGTTCCTATGGTATTCTTTAAT 843
Query 790 GACGAGTTAGTTGGGAGTTTTAAGGAGCTTAAGGTATTGGAGGAATCAGGAGAGCTTGAG 849
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 844 GAAAAGTTAGTTGGGAGTTATAAGGAGCTTAAGGTATTGGAGGAATCAGGAGAGCTTGAG 903
Query 850 GAGAAGATCAAACATTTGATAGAAGAAGCACCGCCTCGGGAAGCTCCTCTGCCACCTTTT 909
||||||||||||||||||||||||||| |||||||||||||||||||| | || ||||||
Sbjct 904 GAGAAGATCAAACATTTGATAGAAGAAACACCGCCTCGGGAAGCTCCTTTACCGCCTTTT 963
Query 910 TCAGGGGAAGATGATGCATCAAGTAAAGGTCCTGTAGATGAACTAGCTTTAATAGTGTTG 969
|||||||||||||||||||| |||||||| ||||| ||||| ||||||||||||||||||
Sbjct 964 TCAGGGGAAGATGATGCATCGAGTAAAGGACCTGTTGATGAGCTAGCTTTAATAGTGTTG 1023
Query 970 AAGATGAAGCCTTGCGTAGTTAAGGATCGGTTTTATAAAATGAGAAGGTTTAAAAACTGT 1029
|||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 1024 AAGATGAAGCCTTGTGTAGTTAAGGATCGGTTTTATAAGATGCGTAGGTTTAAAAACTGT 1083
Query 1030 TTCTTAGGTTCGGAAGCTGTGGATTTCTTATCCGCGGATCAAAGTCTAGAAAGAGACGGG 1089
||||||||||| |||||||| ||||||||||| ||||||||| | ||||||||||| |||
Sbjct 1084 TTCTTAGGTTCTGAAGCTGTTGATTTCTTATCTGCGGATCAACGACTAGAAAGAGATGGG 1143
Query 1090 CCAAGGCCGATCGTGGAAATCGCGTCAAGGCTCAGACTTGTGTATCGAGCAATTCTTGAA 1149
||||||||||| ||||||||||| || || |||||||||||||| ||||| |||||||||
Sbjct 1144 CCAAGGCCGATTGTGGAAATCGCATCGAGACTCAGACTTGTGTACCGAGCGATTCTTGAA 1203
Query 1150 GCTTACACTTCGCCAGATGGAAAACATGTAGACTACAGAAGCATCCATGGGAGTGAAGAG 1209
||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1204 GCTTACACTTCACCGGATGGAAAACATGTGGACTATAGAAGCATCCATGGGAGTGAAGAG 1263
Query 1210 TTTGCAAGGTACCTACGAATAATCCAGGAGCTCCATAGAGTAGAGCTTGAAGATATGCAG 1269
|||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1264 TTTGCAAGGTACTTGCGAATAATCCAGGAGCTTCATAGAGTAGAGCTTGAAGATATGCAA 1323
Query 1270 AGAGAGGAAAAGCTCGCGTTCTTCATAAACCTTTATAACATGATGGCTATACACTCAATA 1329
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1324 AGAGAGGAAAAGCTAGCGTTCTTCATAAACCTTTATAACATGATGGCTATACATTCAATA 1383
Query 1330 CTAGTATGGGGCCATCCGGCAGGAACTTTTGATCGGACGAAGATGTTTATGGACTTCAAG 1389
||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 1384 CTAGTATGGGGACATCCAGCAGGAACTTTTGATCGAACCAAGATGTTTATGGACTTCAAG 1443
Query 1390 TATGTGATTGGCGGCAACACCTACTCGCTTTCGGCTATACAAAATGGAATTCTAAGGGGT 1449
||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1444 TATGTGATTGGTGGCTACACTTACTCGCTTTCGGCTATACAAAATGGAATTCTAAGGGGT 1503
Query 1450 AACCAGCGACCGATGTTCAATCCTATGAAACCATTTGGTGCAAAGGACAAACGTTCCAAG 1509
||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1504 AACCAGCGACCGATGTTTAATCCTATGAAACCATTTGGTGTAAAGGATAAACGTTCCAAG 1563
Query 1510 GTTGCTCTGCCTTATGCAGAGCCTCTAACTCATTTTGCTCTGGTTTGTGGAACGCGGTCT 1569
|||||||||||||||||||||||| | ||||||||| |||||||||||||||| ||||||
Sbjct 1564 GTTGCTCTGCCTTATGCAGAGCCTTTGACTCATTTTACTCTGGTTTGTGGAACTCGGTCT 1623
Query 1570 GGACCACCGCTTCGATGCTTCACACCTGGAGAGATCGATAAAGAACTCATGGAGGCAGCT 1629
|||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1624 GGACCACCTCTTCGATGCTTCACGCCTGGAGAGATCGATAAAGAACTAATGGAGGCAGCT 1683
Query 1630 CGCGATTTCTTAAGATGTGGTGGACTCATAGTTGATCTCAATGACAAATTTGCATACATC 1689
|||||||||||||||||||||||||| | |||||||||||||| |||| ||||| | |||
Sbjct 1684 CGCGATTTCTTAAGATGTGGTGGACTTAGAGTTGATCTCAATGCCAAAGTTGCAGAGATC 1743
Query 1690 AACCAAATCTTTAACTGGTA 1709
| | |||||||| | |||||
Sbjct 1744 AGCAAAATCTTTGATTGGTA 1763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84537717780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5