BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327116
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49000.1 | Symbols: | RNA polymerase III subunit RPC82 fami... 2399 0.0
> AT3G49000.1 | Symbols: | RNA polymerase III subunit RPC82 family
protein | chr3:18162701-18165986 FORWARD LENGTH=1914
Length=1914
Score = 2399 bits (1299), Expect = 0.0
Identities = 1483/1573 (94%), Gaps = 8/1573 (1%)
Strand=Plus/Plus
Query 1 ATGGCTATGTCTGAGTTTGGCATTGTCTATGCCGTCCATATCATCACTGTCCAATTCGGC 60
||| ||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||
Sbjct 203 ATGTCTATGTCTGAGTTTGGCATTGTCTACGCCATCCATATCATCACCGTCCAATTCGGC 262
Query 61 TCCGTCGTATCGAAAGTTTGCGAATGTCTTCTACGTAAAGGACCTCTTTCCTCGCGAGAC 120
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 263 TCCGTCGTCTCGAAAGTTTGTGAATGTCTTCTACGTAAAGGACCTCTTTCCTCACGAGAC 322
Query 121 ATCTCTCGTTTAGCTGAATCCGATATCAATCATAACCAAGTTAAAGATATTCTTTATCTC 180
|||||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||||
Sbjct 323 ATCTCTCGTTTAGCTGAATCAGATATCAACCATAACAAAGTTAAAGATATTCTCTATCTC 382
Query 181 TTGATTCAGCATAATTGTGTTCAAGCTTTCTCTATTGAACCACCTGATGGTTCTGAGAGC 240
||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 383 TTGATTCAGCACAATTGTGTTCAAGCTTTCTCCATTGAACCTCCTGATGGTTCTGAGAGC 442
Query 241 AAAGCAATTGTACAATATATTGTGCTATTTAACAACATTTTGCATCGTGTGAGGTATAAC 300
||||| |||||||| ||||||||| | |||||||||||| ||||||||||||||||||||
Sbjct 443 AAAGCTATTGTACAGTATATTGTGTTGTTTAACAACATTCTGCATCGTGTGAGGTATAAC 502
Query 301 AAGTTTTCGAGGATTGTGAATGAAGAACTTGGCTCTGAGTGCGGCGCAGTTCTTGATGGT 360
||||||||||||||||| || |||||||||| ||| ||||||| |||||||||||||||
Sbjct 503 AAGTTTTCGAGGATTGTAAACGAAGAACTTGACTCCAAGTGCGGTGCAGTTCTTGATGGT 562
Query 361 TTACTTAGTAACGGTAGGCTTACCTTGGGACAGCTAATTGAAAGAGACAGAGATTCAGGA 420
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 563 TTACTTAGTAACGGTAGGCTTACCTTGGGACAGTTTATTGAAAGAGATAGAGATTCAGGA 622
Query 421 AAGACGATAGGTTCTGAAGCAATCAGAGATTCTCTTCAGAAATTGGTTGCTGCCCGTTTT 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AATACGATAGGTTCTGAAGCAATCAGAGATTCTCTTCAGAAATTGGTTGCTGCCCGTTTT 682
Query 481 GTTGAGCGCATTCCTTCTCCCGAACCTGTTCTTGGTAACAAAGACCAAGAGCCGGCAAAG 540
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 683 GTTGAGCGCATTCCTTCTCCCGAACCTGTTCTTGGAAACAAAGAAAAAGAGCCGGCAAAG 742
Query 541 AAAAGAGGCGCTAAAGCTGCCAAGATTCTTAAAGAACCGGAAACCTTGGAAGAACGTGTT 600
| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct 743 AGAAGAGGCGCTAAAGCTGCCAAGATTCTTAAAGAACCAGAAACCTTGGAGGAACAAGTT 802
Query 601 GTTGAAGCAGCAACTCCAGTTGACGCAATAAGGTTTCCACTTATATTTGAAGAAGATTTC 660
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 803 GTTGAAGCAGCAACTCCAGTTGACGCAATAAGGTTTCCACTTATATTCGAAGAAGATTCC 862
Query 661 AATTCTTCTTTAGCAGATGACGATAGCAACATCACTGAGGGGAAGCGTAAACAACGTGAT 720
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 863 AATTCATCTTTAGCAGATGACAATAGCAACATCACTGAGGGGAAGCGTAAACAACGTGAT 922
Query 721 GTGGACTCATCAGATCCGAGCAGTGGAGTAATTTGGCGTCCCAATTTTGAGGAGTTCATC 780
|||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 923 GTGGACACATCAGATTCGAGCAGTGGAGTAATTTGGCGTCCTAATTTTGAGGAGTTCATC 982
Query 781 CACCGCCTTAGACATAAGGCGTGTGTGGAGATCGTGAAAGAGCGCAGGGATGAAGGATGT 840
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 983 CACCGCCTTAGACATAAGGCGTGTGTGGAGATAGTGAAAGAGCGCCGGGATGAAGGATGT 1042
Query 841 GCCATTGTCTTGAGGGCAATGTTAGAAGTAGGAAGACCACAGGAGAAGAAGGTGAAAACA 900
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct 1043 GCCATTGTCTTGAGGGCAATGTTAGAAGTAGGAAGATCGCAAGAGAAGAAGGTGAAAACA 1102
Query 901 GACAATTCGGCTCCAATGTCAGTTGGTTCCATTTATGAAGAGGTTATAAAGACAGAAGCA 960
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1103 GACAATTCGGCTCCAATGTCAGTTGGTTCCATTTATGAAGAAGTTATTAAGACAGAAGCA 1162
Query 961 GGTCGCACTATGTTACAAGAGCGAGTTGAAGCATGCCTTGACCAATTGAGTGCTACGTCT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 GGTCGCACTATGTTACAAGAGCGAGTTGAAGCATGCCTTGACCAATTGAGTGCTACGTCT 1222
Query 1021 TCTTATCTACCAGCATTTGTGA-CAGAAATGAATGATTCATACATAGTTGATTTTAAATC 1079
|||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||
Sbjct 1223 TCTTATCTACCAGCATTTGTGAAC-GAAGTGAATGATTCATACATAGTTGATTATAAATC 1281
Query 1080 CATTATCAGCGTAGCACAGAAAGATGAGATAGAAGCAGTAGTTATGAGAAGATATGGGAA 1139
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1282 CATTATCAGCGTAGCACAGAAAGATGAGATAGAGGCAGTAGTGATGAGAAGATATGGGAA 1341
Query 1140 AGAAGCTTTCAGAATGTTCAGATACTTATCACAGGAAGGGCGTTTTGTTGACACCGATAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1342 AGAAGCTTTCAGAATGTTCAGATACTTATCACAGGAAGGGCGTTTTGTTGAGACCGATAA 1401
Query 1200 GATTGCTGATGCCGCGCTGACTGAAAAGAAAGACACACCGCAAATCCTTTTGAAGATGTG 1259
||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 1402 GATTGCTGATGCCGCGCTGACTGAAAAGAAAGATACACCGCAATTCCTTTTAAAGATGTG 1461
Query 1260 GAAAGACGGATACTTACATATGCAGAAATTGGCGATCACGGGTACG--TATGTA--C-C- 1313
|||||||||||||||||||||||||||||||||| |||| | | || |||||| | |
Sbjct 1462 GAAAGACGGATACTTACATATGCAGAAATTGGCGGTCACAGCTCCGGGTATGTATACACC 1521
Query 1314 GTTTCTGTTGTGGAAGGTAAACAAGTTGATTGTGACGAGGCAAATGTTAGATGAAATGTA 1373
|||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||
Sbjct 1522 GTTTCTGTTGTGGAAGGTAAACAAGTTGATTGTGACAACTCAAATGTTGGATGAGATGTA 1581
Query 1374 TCATGCTTCACTTAACTTGAATCTCAGGTTGGCTCATGAGTTAGAATCCGAAAAAGAGTT 1433
||||| || |||||||||| ||| |||||||| |||||||||||| |||||||||||||
Sbjct 1582 CCATGCGTCCCTTAACTTGAGTCTTAGGTTGGCCCATGAGTTAGAAGCCGAAAAAGAGTT 1641
Query 1434 GCTGATGTTGCCATCAGATAAACTGGAAGGACCATTAAAGGAGAGAGTGAAAAAGGTCAG 1493
|||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1642 GCTGTTGTTGCCATTAGATAAACTGGAAGGACCATTAAAGGAGAGACTGAAAAAGGTCAA 1701
Query 1494 AGCCAAGAGGCTGTTACTCTCTTCCACTATGTTTAAACTTGATGATGCGATTATGCTATT 1553
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1702 AGCCAAGAGGCTGTTACTCTCTTCCACTATGTTTAAACTTGATGATGCCATTATGCTTTT 1761
Query 1554 TCACGACTTTTAA 1566
||| |||||||||
Sbjct 1762 TCATGACTTTTAA 1774
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77308839300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5