BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327144

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G09610.1 | Symbols: GASA2 | GAST1 protein homolog 2 | chr4:6...   438    1e-122
  AT4G09600.1 | Symbols: GASA3 | GAST1 protein homolog 3 | chr4:6...   350    6e-96 


> AT4G09610.1 | Symbols: GASA2 | GAST1 protein homolog 2 | chr4:6074770-6075645 
REVERSE LENGTH=529
Length=529

 Score =  438 bits (237),  Expect = 1e-122
 Identities = 280/301 (93%), Gaps = 2/301 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAATCTTACGAAGGACACTGGTTCTGTTACTTATCCTCTTCTGTCTTACCACTTAT  60
            |||||| |||| ||||| ||||||||||||||||| ||| || ||||||| |||||||||
Sbjct  73   ATGGCAGTCTTCCGAAGTACACTGGTTCTGTTACTAATCATCGTCTGTCTCACCACTTAT  132

Query  61   GAGCTTCACGTTCACGCTGCTGATGACGCAAAGGTCGGTGAAGGCGTAGTGAAAATTGAT  120
            ||||||||||| |||||||||||||  ||||||||||||||||||||||||||||| |||
Sbjct  133  GAGCTTCACGTCCACGCTGCTGATGGTGCAAAGGTCGGTGAAGGCGTAGTGAAAATCGAT  192

Query  121  TGTGGTGGGAGATGCAAAGGTAGATGCAGCAAATCTTCGAGAACGAAACTGTGCTTGAGA  180
            ||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||
Sbjct  193  TGTGGTGGGAGATGCAAAGATAGATGCAGCAAATCTTCGAGAACGAAGCTATGCTTGAGA  252

Query  181  GCGTGCAACAGCTGTTGTACCCGATGCAACTGTGTGCCACCTGGTACTGCCGGAAACCA-  239
            |||||||||||||||||| |||| |||||||||||||||||||||||| | ||||| || 
Sbjct  253  GCGTGCAACAGCTGTTGTTCCCGCTGCAACTGTGTGCCACCTGGTACTTCTGGAAA-CAC  311

Query  240  CCACCTTTGTCCTTGCTACGCCTCCATTACTACTCACGGTGGCCGCCTCAAGTGCCCTTA  299
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  312  CCACCTTTGTCCTTGCTACGCCTCCATTACCACTCACGGTGGCCGCCTCAAGTGCCCTTA  371

Query  300  A  300
            |
Sbjct  372  A  372


> AT4G09600.1 | Symbols: GASA3 | GAST1 protein homolog 3 | chr4:6072804-6073612 
REVERSE LENGTH=606
Length=606

 Score =  350 bits (189),  Expect = 6e-96
 Identities = 266/303 (88%), Gaps = 6/303 (2%)
 Strand=Plus/Plus

Query  1    ATGGCAATCTTACGAAGGACACTGGTTCTGTTACTTATCCTCTTCTGTCTTACCACTTAT  60
            ||||||||||| ||||| ||||| ||| |  | || ||||||||||| || ||||||| |
Sbjct  97   ATGGCAATCTTCCGAAGTACACTAGTTTTACTGCTGATCCTCTTCTGCCTCACCACTTTT  156

Query  61   GAGCTTCACGTTCACGCTGCTGATGACGCA-AAGGTCGGTGAAGGCGTAGTGAAAATTGA  119
            |||||||| ||||| |||||||| ||  || || ||||||||||||||||||||||||||
Sbjct  157  GAGCTTCATGTTCATGCTGCTGAAGATTCACAA-GTCGGTGAAGGCGTAGTGAAAATTGA  215

Query  120  TTGTGGTGGGAGATGCAAAGGTAGATGCAGCAAATCTTCGAGAACGAAA-CTGTGCTTGA  178
            ||| |||||||||||||||||||||||||||||||| |||||  | ||| ||||| ||||
Sbjct  216  TTGCGGTGGGAGATGCAAAGGTAGATGCAGCAAATCGTCGAG-GCCAAATCTGTGTTTGA  274

Query  179  GAGCGTGCAACAGCTGTTG-TACCCGATGCAACTGTGTGCCACCTGGTACTGCCGGAAAC  237
            |||| |||||||||||||| || ||| ||||||||||||||||| || || ||||| |||
Sbjct  275  GAGCATGCAACAGCTGTTGTTA-CCGCTGCAACTGTGTGCCACCAGGCACCGCCGGGAAC  333

Query  238  CACCACCTTTGTCCTTGCTACGCCTCCATTACTACTCACGGTGGCCGCCTCAAGTGCCCT  297
            |||||||||||||||||||||||||||||||| ||||  |||||||| ||||||||||||
Sbjct  334  CACCACCTTTGTCCTTGCTACGCCTCCATTACCACTCGTGGTGGCCGTCTCAAGTGCCCT  393

Query  298  TAA  300
            |||
Sbjct  394  TAA  396



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13873898724


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5