BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327146
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09640.1 | Symbols: | Protein of unknown function (DUF803) ... 1792 0.0
AT1G34470.1 | Symbols: | Protein of unknown function (DUF803) ... 1002 0.0
> AT4G09640.1 | Symbols: | Protein of unknown function (DUF803)
| chr4:6088213-6090888 REVERSE LENGTH=1665
Length=1665
Score = 1792 bits (970), Expect = 0.0
Identities = 1101/1162 (95%), Gaps = 17/1162 (1%)
Strand=Plus/Plus
Query 1 ATGGTGGATTCTAGTGGAAGTTGGAGAGATGCTTATAAAGGAATGTCGTCGGATAATGTA 60
|||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 285 ATGGTGTATTCTAGTGGAAGTTGGAGAGATGCGTATAAAGGAATGTCGTCTGATAATGTA 344
Query 61 AAGGGTTTAGTGTTGGCTCTATCTTCAAGCT-TATTCATTGGTGCTAGCTTCATTGTCAA 119
||||||||||||||||||||||||||||| | |||||||||| |||||||||||||| ||
Sbjct 345 AAGGGTTTAGTGTTGGCTCTATCTTCAAG-TATATTCATTGGAGCTAGCTTCATTGTTAA 403
Query 120 GAAGAAAGGACTTAAGAAAGCTGGTGCTTCTGGTCTCAGGGCAGGGTCTGGAGGTTATTC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 404 GAAGAAAGGACTTAAGAAAGCTGGTGCTTCTGGTCTCAGGGCAGGGTCTGGAGGCTATTC 463
Query 180 TTACTTGCTTGAGCCTCTTTGGTGGATAGGCATGATAACAATGATTGTGGGGGAAATTGC 239
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 464 TTACTTGCTTGAGCCTCTCTGGTGGATAGGAATGATAACAATGATTGTGGGGGAAATTGC 523
Query 240 AAACTTTGCTGCGTATGCGTTTGCACCTGCCATTCTCGTTACTCCTCTTGGTGCGCTTAG 299
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 524 AAACTTTGCTGCGTATGCGTTTGCACCTGCCATTCTAGTTACTCCTCTTGGTGCGCTTAG 583
Query 300 CATTATTATCAGTGCTTCTCTTGCACATATCATCTTACAAGAAAAGTTGCACACTTTCGG 359
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 584 CATTATTATCAGCGCTTCTCTAGCACATATCATCTTACAAGAAAAGTTGCACACTTTCGG 643
Query 360 GATCCTTGGTTGTGCTTTATGTATCGTTGGTTCGGTAACAATCGTGTTACATGCTCCACA 419
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 644 GATCCTTGGTTGTGCTTTATGTATCGTTGGTTCGGTTACAATCGTGTTACATGCTCCACA 703
Query 420 AGAACAAGTTATTGATTCCGTTTTAGAAGTTTGGAATCTTGCAACAGAACCTGCTTTTCT 479
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 704 AGAACAAGATATTGTTTCCGTTTTAGAAGTTTGGAATCTTGCAACAGAACCTGCTTTTCT 763
Query 480 CTTCTACGCTGCGGCTGTGGTAGGAGCAGCTATTGTACTTATAGTTCAATTTATACCACT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 CTTCTACGCTGCGGCTGTGGTAGGAGCAGCTATTGTACTTATAGTTCAATTTATACCACT 823
Query 540 TTACGGGCAATCCCATGTCATGGTATATATCGGTGTTTGCTCTCTTATAGGATCATTATC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 824 TTACGGGCAATCCCATGTCATGGTATATATCGGTGTTTGCTCTCTTATAGGATCATTATC 883
Query 600 GGTTATGAGCGTCAAGGCGCTTGGAATAGCGTTGAAACTCACTTTTTCTGGAACGAATCA 659
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 884 GGTTATGAGCGTGAAGGCGCTTGGAATAGCGTTGAAACTCACATTTTCTGGAACGAATCA 943
Query 660 ATTAGGATACCCGCAAACATGGGTCTTCACTGTGATAGTTCTTATGTGCGTGATAACACA 719
||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||||
Sbjct 944 GTTAGGGTACCCGCAAACATGGGTCTTCACCGTGATAGTTCTTTTCTGCGTGATAACACA 1003
Query 720 AATGAACTATCTAAACAAGGCGCTAGATACGTTCAACACGGCAGTGGTTTCCCCCATATA 779
|||||||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 1004 AATGAACTATTTAAACAAGGCGCTTGATACGTTCAACACAGCAGTGGTTTCACCCATATA 1063
Query 780 TTACGTTATGTTCACGTCATTGACAATCTTGGCTAGTGTCATCATGTTTAAGGATTGGGA 839
||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1064 TTATGTTATGTTCACGTCGTTGACGATCTTGGCTAGTGTCATCATGTTTAAGGATTGGGA 1123
Query 840 TCGGCAGAACGGAACACAGATCTTTACAGAGCTGTGTGGGTTCGTCACAATCCTATCTGG 899
|||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 1124 TCGGCAGAGCGGAACACAGATCATGACAGAGTTGTGTGGGTTCGTCACAATCCTATCTGG 1183
Query 900 AACTTTTCTTCTTCACACAACAACGGACATGGTTGATAGCGAGTCTAAAGGAAA-----C 954
|||||||||||||||||||||||| |||||||||||| | |||||||||||||| |
Sbjct 1184 AACTTTTCTTCTTCACACAACAACAGACATGGTTGATGGAGAGTCTAAAGGAAATTTATC 1243
Query 955 ----GAT-A--AT---CATCTGCTTCTGCGAATTCCAAAACATTCAGAAGACAGTAACGG 1004
|| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 ATCAGAGGAGGATAGTCATCTGCTTCTGCGAATTCCAAAACATTCAGAAGACAGTAACGG 1303
Query 1005 GTTTGCGCAGGACGGGATCATTCTCAGTCTAAGACGCCAAGAGTCTGCAAAGTCACCACG 1064
||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 GTTTGTGCAGGATGGCATCATTCTCAGTCTAAGACGCCAAGAGTCTGCAAAGTCACCACG 1363
Query 1065 GCCTGCTCGTCAAACCAAGCAACTAGAAGAGGATCTTGAAGCTATACCACTCCGAAGACA 1124
||||||||| |||| ||||||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1364 GCCTGCTCGGCAAAACAAGCAACTGGAAGATGATCTTGAAGCTGTACCACTCCGAAGACA 1423
Query 1125 AGAGAGTTCATTACGTTCATAA 1146
||||||||||||||||||||||
Sbjct 1424 AGAGAGTTCATTACGTTCATAA 1445
> AT1G34470.1 | Symbols: | Protein of unknown function (DUF803)
| chr1:12604300-12607033 FORWARD LENGTH=1656
Length=1656
Score = 1002 bits (542), Expect = 0.0
Identities = 892/1062 (84%), Gaps = 20/1062 (2%)
Strand=Plus/Plus
Query 13 AGTGGAAGTTGGAGAGATGCTTATAAAGGAATGTCGTCGGATAATGTAAAGGGTTTAGTG 72
||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||
Sbjct 287 AGTGGGAGTTGGAGAGATGCGTATAAAGGAATGTCATCGGATAATATAAAGGGTTTAGTA 346
Query 73 TTGGCTCTATCTTCAAGCTTATTCATTGGTGCTAGCTTCATTGTCAAGAAGAAAGGACTT 132
|||||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 347 TTGGCTTTATCTTCAAGCTTATTCATTGGTGCTAGTTTCATTGTTAAGAAGAAAGGTCTC 406
Query 133 AAGAAAGCTGGTGCTTCTGGTCTCAGGGCAGGGTCTGGAGGTTATTCTTACTTGCTTGAG 192
|||| ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||
Sbjct 407 AAGAGAGCTGGTGCTTCTGGTCTCAGAGCAGGTTCTGGAGGTTATTCTTACCTGCTTGAG 466
Query 193 CCTCTTTGGTGGATAGGCATGATAACAATGATTGTGGGGGAAATTGCAAACTTTGCTGCG 252
||||| |||||| ||||||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 467 CCTCTCTGGTGGGTAGGCATGATAACGATGATTGTAGGGGAAATTGCCAATTTTGCTGCT 526
Query 253 TATGCGTTTGCACCTGCCATTCTCGTTACTCCTCTTGGTGCGCTTAGCATTATTATCAGT 312
||||| ||||| ||||||||| | || |||||||||||||| || ||||| |||||||||
Sbjct 527 TATGCCTTTGCGCCTGCCATTTTAGTAACTCCTCTTGGTGCTCTCAGCATAATTATCAGT 586
Query 313 GCTTCTCTTGCACATATCATCTTACAAGAAAAGTTGCACACTTTCGGGATCCTTGGTTGT 372
||| ||||||| ||| ||||| |||| ||||||||||| ||||||||| | |||||||||
Sbjct 587 GCTGCTCTTGCTCATGTCATCCTACACGAAAAGTTGCATACTTTCGGGCTTCTTGGTTGT 646
Query 373 G-CTTTATGTATCGTTGGTTCGGTAACAATCGTGTTACATGCTCCACAAGAACAAGTTAT 431
| ||| |||| | ||||||||| |||| || || ||||||||||| |||||||||| ||
Sbjct 647 GTCTT-ATGTGTTGTTGGTTCGATAACTATTGTCTTACATGCTCCTCAAGAACAAGAGAT 705
Query 432 TGATTCCGTTTTAGAAGTTTGGAATCTTGCAACAGAACCTGCTTTTCT-CTTCTACGCTG 490
|||||| || ||| |||| ||||||||||| ||||||||||||||||| || ||||||||
Sbjct 706 TGATTCTGTGTTACAAGTATGGAATCTTGCGACAGAACCTGCTTTTCTTCT-CTACGCTG 764
Query 491 CGGCTGTGGTAGGAGCAGCTATTGTACTTATAGTTCAATTTATACCACTTTACGGGCAAT 550
| || || ||||||||||| ||| |||| |||||||| ||| |||||| ||||| || |
Sbjct 765 CAGCAGTAGTAGGAGCAGCCATTATACTCATAGTTCAGTTTGTACCACAGTACGGTCAGT 824
Query 551 CCCATGTCATGGTATATATCGGTGTTTGCTCTCTTATAGGATCATTATCGGTTATGAGCG 610
| |||||||||||||||||||| ||||| |||||| | |||||||| ||||| |||||||
Sbjct 825 CACATGTCATGGTATATATCGGGGTTTGTTCTCTTGTTGGATCATTGTCGGTCATGAGCG 884
Query 611 TCAAGGCGCTTGGAATAGCGTTGAAA-CTCACTTTTTCTGGAACGAATCAATTAGGATAC 669
|||| ||||| || ||||| || ||| || || ||||| |||| |||||| ||| |||
Sbjct 885 TCAAAGCGCTCGGGATAGCATT-AAAGCTTACGTTTTCAGGAATGAATCAGTTAATTTAC 943
Query 670 CCGCAAACATGGGTCTTCACTG-TGATAGTTCTTATGTGCGTGATAACACAAATGAACTA 728
|| || |||||||||||||| | |||||||||| | ||||||||||| |||||||||||
Sbjct 944 CCTCAGACATGGGTCTTCAC-GCTGATAGTTCTCACCTGCGTGATAACCCAAATGAACTA 1002
Query 729 TCTAAACAAGGCGCTAGATACGTTCAACACGGCAGTGGTTTCCCCCATATATTACGTTAT 788
||||||||||||||| || || ||||||||||| || ||||| || ||||| || |||||
Sbjct 1003 TCTAAACAAGGCGCTTGACACTTTCAACACGGCTGTAGTTTCACCTATATACTATGTTAT 1062
Query 789 GTTCACGTCATTGACAATCTTGGCTAGTGTCATCATGTTTAAGGATTGGGATCGGCAGAA 848
|||||| |||||||| ||| | ||||||||||||||||||||||| |||||||| ||| |
Sbjct 1063 GTTCACATCATTGACCATCCTAGCTAGTGTCATCATGTTTAAGGACTGGGATCGACAGGA 1122
Query 849 CGGAACACAGATCTTTACAGAGCTGTGTGGGTTCGTCACAATCCTATCTGGAACTTTTCT 908
|||||| ||||| | || ||| |||||||||| || |||||||| || ||||| ||| |
Sbjct 1123 CGGAACTCAGATAGTGACGGAGTTGTGTGGGTTTGTGACAATCCTTTCAGGAACCTTT-T 1181
Query 909 T-CTTCACACAACAACGGACATGGTTGATAGCGAGTCTAAAGGAAACGATAATCATCTG- 966
| ||||||| ||||| ||| ||||||||| | | ||| | | || || ||
Sbjct 1182 TGCTTCACAAAACAAAGGATATGGTTGAT-G-GT-TCTTC-GTCCTTGGGAA--ATTTGG 1235
Query 967 CTTCTGCGAATTCCAAAACA-TTCAGAAGACAGTAACGGGTTTGCGCAGGACGGGATCAT 1025
|| || || |||| ||||| || ||||| ||||| ||||||| ||| || ||||||
Sbjct 1236 CT-CTTCGCCTTCCTAAACAATTG-GAAGATAGTAATGGGTTTGAGCAAGAAGGGATCCC 1293
Query 1026 TCTCAGTCTAAGACGCCAAGAGTCTGCAAAGTCACCACGGCC 1067
|||| ||| |||||||| |||| | | ||||| ||| ||||
Sbjct 1294 ACTCACTCTCAGACGCCACGAGTGTACCAAGTCGCCAAGGCC 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5