BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327171

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G09965.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   215    4e-55


> AT4G09965.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G47010.2); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr4:6244740-6245686 REVERSE LENGTH=672
Length=672

 Score =  215 bits (116),  Expect = 4e-55
 Identities = 206/246 (84%), Gaps = 19/246 (8%)
 Strand=Plus/Plus

Query  257  AAGAAAGGGGATGGTTGGACTGGAGATTCAAGAACTTGGGTGCTCGATGTTGGAGTTCTC  316
            ||| ||||  ||||||||| ||| |||||||||||||||| | || |   ||||| ||| 
Sbjct  442  AAGCAAGGAAATGGTTGGATTGGTGATTCAAGAACTTGGGAGGTC-A--ATGGAGCTCTA  498

Query  317  TTAAGTCGTCTCTACTTCTACTAGGTAATATAGATTATGACCCGGGAACCAAACCAGCAA  376
            | ||| ||||||||||||||| |||      ||    | |||||||||||||||||||||
Sbjct  499  TCAAGCCGTCTCTACTTCTACCAGG------AG----T-ACCCGGGAACCAAACCAGCAA  547

Query  377  AGCGAGTGTGGATATCGATCAACGTTG---CAGAAATACATGTTAGCAATAGACAAGAAA  433
            ||||| |||||| ||||||||| ||||   |||| ||| |||||||||||||||||||||
Sbjct  548  AGCGAATGTGGACATCGATCAATGTTGTTACAGATATATATGTTAGCAATAGACAAGAAA  607

Query  434  CTG-TAGAGTGGACAGTGAGTGATTTTGATGTGTTGGTTCCACAAAAACAAACAAGATCC  492
            ||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct  608  CTGCT-GAGTGGACAGTGAGTGATTTTGATGTGTTGGTTCAACAAAAAGAAACAAGATCC  666

Query  493  TTGTGA  498
            | ||||
Sbjct  667  TCGTGA  672



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5