BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327172
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09970.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 876 0.0
> AT4G09970.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
EXPRESSED IN: 18 plant structures; EXPRESSED DURING:
13 growth stages; Has 15 Blast hits to 15 proteins in 6 species:
Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants
- 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:6245983-6247768 FORWARD LENGTH=979
Length=979
Score = 876 bits (474), Expect = 0.0
Identities = 672/764 (88%), Gaps = 27/764 (4%)
Strand=Plus/Plus
Query 1 ATGGCAAGTTTGCACCTTGGAGCTGCTTCGTTGATCAATGAGGACGTTTTTGGCTCTTCC 60
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||
Sbjct 56 ATGGCAAGTTTGCACCTTGGAGGTGCTTCGTTGATCAATGAGGTCGTTTTTGGCTCCTCC 115
Query 61 TTGATCGGTTTCAGAAGTAAACGTTTTAGAA-GAGTTTCAGAGAGATGGAAGATTCGAGC 119
||||| ||||||||||||||||| |||| || ||| |||||||||||| | | || | |
Sbjct 116 TTGATTGGTTTCAGAAGTAAACGGTTTA-AACGAGCTTCAGAGAGATGTAGGTTTTGTGT 174
Query 120 TCAGCAGATGTTAGAGAATGAACAGAGAACTCAACACGAACTGGCTCGTTCTGCTAAAAG 179
||| || |||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 175 TCAACAAATGTCAGAGAATGAACAGAGAACTAAACACGAACTGGCTCGTTCTGCTAAAAG 234
Query 180 AAGTGAGTCCTTGAGACGTATTTTGAAGCAATATGGAGTATCAGTAGAAACCCCTGAAGA 239
||| ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct 235 AAGCGAGTCTTTGAGACGTATTTTAAAGCAATATGGAGTATCTGTAGAAAACCCTGAAGA 294
Query 240 AAATAAAACAAGTAGTAGACTTGATGACCTAAATTTTGAAGAGAAGCACCACGATGATGT 299
|| ||| |||||||||||||||||||||||| ||| ||||||||||||| |||| |||
Sbjct 295 AAGTAAGACAAGTAGTAGACTTGATGACCTAGATTGTGAAGAGAAGCAC---GATGCTGT 351
Query 300 TCCTTCTTCTGTTATAGATGACG-CT--AAGATGAACACAACTGAGGAACTACCTGATTT 356
| |||||||||| |||||||||| || |||||||| ||||||||||| | ||||||||
Sbjct 352 TACTTCTTCTGTCATAGATGACGACTCTAAGATGAATACAACTGAGGAGTTGCCTGATTT 411
Query 357 ACGCCAGCAAGAGAAATACAGTGAGACTGTTAGCACTGCAGATAATCTTTCAGGGCACGA 416
||||| | ||||||||||| |||||||||| | |||||||||||||||||||| || |
Sbjct 412 ACGCCGGGTAGAGAAATACACTGAGACTGTTGGTACTGCAGATAATCTTTCAGGACAAAA 471
Query 417 TCACCACAATT-TGCCACATTTAAACACAGGTGTTTTATTCACTTCTCTGCTTCCTGTTC 475
|||||| |||| | || ||||| |||||||||||||| || |||||||||||||||||||
Sbjct 472 TCACCA-AATTCTCCCCCATTTGAACACAGGTGTTTTGTTAACTTCTCTGCTTCCTGTTC 530
Query 476 TTGGGTTCTGCATTGTATGCATAATTGGGACGCTACACTCAATAATCTCCAGAAA-ACCA 534
|||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| || |
Sbjct 531 TTGGATTCTGCATCATATGCATAATTGGGACGTTACACACAATAATCTCCAGAAAGAC-A 589
Query 535 TCACAAGATCATCACCATGGCTCCAAAACAACAAGGTGGAGAACCGCGTTGATTGATTGG 594
||||||| |||||| ||||||||| ||| ||||||||||||| || || ||||||
Sbjct 590 TCACAAGGTCATCATCATGGCTCCGAAA------GGTGGAGAACCGCATTAATGGATTGG 643
Query 595 AACGAGCCGCTTACTTCTGATGAACATGATTCG-T--CGCCAGAATACAGAGTCGCTTCA 651
|||||||||||| ||||||||| |||||||||| | | |||||||||||||||||||||
Sbjct 644 AACGAGCCGCTTGCTTCTGATGGACATGATTCGATGTCTCCAGAATACAGAGTCGCTTCA 703
Query 652 ACGAATCAGGAAGCTA-----AC-GATGAAATGAATGAAGCATATAGCAGAGTAGAGCTC 705
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 704 ACGAATCAGGAAGCTACCGCTACTGATGAAATGAATGAAGCATATAGCAGAGTAGAGCTC 763
Query 706 GAGTACAAGAGATTTTTATTGGAATGTGGAGTTAGTGAATCTTA 749
||||||||||||||| |||| |||||||| || ||||||||||
Sbjct 764 GAGTACAAGAGATTTCTATTAGAATGTGGGGTGGGTGAATCTTA 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5