BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg327172 Length=750 Score E Sequences producing significant alignments: (Bits) Value AT4G09970.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 876 0.0 > AT4G09970.1 | Symbols: | unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; Has 15 Blast hits to 15 proteins in 6 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:6245983-6247768 FORWARD LENGTH=979 Length=979 Score = 876 bits (474), Expect = 0.0 Identities = 672/764 (88%), Gaps = 27/764 (4%) Strand=Plus/Plus Query 1 ATGGCAAGTTTGCACCTTGGAGCTGCTTCGTTGATCAATGAGGACGTTTTTGGCTCTTCC 60 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| Sbjct 56 ATGGCAAGTTTGCACCTTGGAGGTGCTTCGTTGATCAATGAGGTCGTTTTTGGCTCCTCC 115 Query 61 TTGATCGGTTTCAGAAGTAAACGTTTTAGAA-GAGTTTCAGAGAGATGGAAGATTCGAGC 119 ||||| ||||||||||||||||| |||| || ||| |||||||||||| | | || | | Sbjct 116 TTGATTGGTTTCAGAAGTAAACGGTTTA-AACGAGCTTCAGAGAGATGTAGGTTTTGTGT 174 Query 120 TCAGCAGATGTTAGAGAATGAACAGAGAACTCAACACGAACTGGCTCGTTCTGCTAAAAG 179 ||| || |||| ||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 175 TCAACAAATGTCAGAGAATGAACAGAGAACTAAACACGAACTGGCTCGTTCTGCTAAAAG 234 Query 180 AAGTGAGTCCTTGAGACGTATTTTGAAGCAATATGGAGTATCAGTAGAAACCCCTGAAGA 239 ||| ||||| |||||||||||||| ||||||||||||||||| ||||||| ||||||||| Sbjct 235 AAGCGAGTCTTTGAGACGTATTTTAAAGCAATATGGAGTATCTGTAGAAAACCCTGAAGA 294 Query 240 AAATAAAACAAGTAGTAGACTTGATGACCTAAATTTTGAAGAGAAGCACCACGATGATGT 299 || ||| |||||||||||||||||||||||| ||| ||||||||||||| |||| ||| Sbjct 295 AAGTAAGACAAGTAGTAGACTTGATGACCTAGATTGTGAAGAGAAGCAC---GATGCTGT 351 Query 300 TCCTTCTTCTGTTATAGATGACG-CT--AAGATGAACACAACTGAGGAACTACCTGATTT 356 | |||||||||| |||||||||| || |||||||| ||||||||||| | |||||||| Sbjct 352 TACTTCTTCTGTCATAGATGACGACTCTAAGATGAATACAACTGAGGAGTTGCCTGATTT 411 Query 357 ACGCCAGCAAGAGAAATACAGTGAGACTGTTAGCACTGCAGATAATCTTTCAGGGCACGA 416 ||||| | ||||||||||| |||||||||| | |||||||||||||||||||| || | Sbjct 412 ACGCCGGGTAGAGAAATACACTGAGACTGTTGGTACTGCAGATAATCTTTCAGGACAAAA 471 Query 417 TCACCACAATT-TGCCACATTTAAACACAGGTGTTTTATTCACTTCTCTGCTTCCTGTTC 475 |||||| |||| | || ||||| |||||||||||||| || ||||||||||||||||||| Sbjct 472 TCACCA-AATTCTCCCCCATTTGAACACAGGTGTTTTGTTAACTTCTCTGCTTCCTGTTC 530 Query 476 TTGGGTTCTGCATTGTATGCATAATTGGGACGCTACACTCAATAATCTCCAGAAA-ACCA 534 |||| |||||||| ||||||||||||||||| ||||| |||||||||||||||| || | Sbjct 531 TTGGATTCTGCATCATATGCATAATTGGGACGTTACACACAATAATCTCCAGAAAGAC-A 589 Query 535 TCACAAGATCATCACCATGGCTCCAAAACAACAAGGTGGAGAACCGCGTTGATTGATTGG 594 ||||||| |||||| ||||||||| ||| ||||||||||||| || || |||||| Sbjct 590 TCACAAGGTCATCATCATGGCTCCGAAA------GGTGGAGAACCGCATTAATGGATTGG 643 Query 595 AACGAGCCGCTTACTTCTGATGAACATGATTCG-T--CGCCAGAATACAGAGTCGCTTCA 651 |||||||||||| ||||||||| |||||||||| | | ||||||||||||||||||||| Sbjct 644 AACGAGCCGCTTGCTTCTGATGGACATGATTCGATGTCTCCAGAATACAGAGTCGCTTCA 703 Query 652 ACGAATCAGGAAGCTA-----AC-GATGAAATGAATGAAGCATATAGCAGAGTAGAGCTC 705 |||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 704 ACGAATCAGGAAGCTACCGCTACTGATGAAATGAATGAAGCATATAGCAGAGTAGAGCTC 763 Query 706 GAGTACAAGAGATTTTTATTGGAATGTGGAGTTAGTGAATCTTA 749 ||||||||||||||| |||| |||||||| || |||||||||| Sbjct 764 GAGTACAAGAGATTTCTATTAGAATGTGGGGTGGGTGAATCTTA 807 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36419756575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5