BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327181
Length=2766
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10060.1 | Symbols: | Beta-glucosidase, GBA2 type family pr... 4183 0.0
> AT4G10060.1 | Symbols: | Beta-glucosidase, GBA2 type family
protein | chr4:6288827-6295402 FORWARD LENGTH=3034
Length=3034
Score = 4183 bits (2265), Expect = 0.0
Identities = 2604/2770 (94%), Gaps = 13/2770 (0%)
Strand=Plus/Plus
Query 1 ATGCAGAAGAATGATCACATGGAAAGTGAACTCCAAACTCAAATGGTTGGAAATGAGAGA 60
||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 122 ATGGAGAAGAATGGTCACACGGAAAGTGAACTTCAAACTCAAATGGTTGGAAATGAGAGA 181
Query 61 CTTCCACAAGTAACGTGGCAAAGGAAGTTGAACAGCAAAGTGAAGAACCCTTCTGAGTTC 120
|| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 182 CTACCTCAAGTAACGTGGCAACGGAAGTTGAACAGCAAAGTGAAGAACCCTTCTGAGTTC 241
Query 121 AAGATGAGTATAAGAGATGTTCTTCATCTGTTTCCAATAGGCTATAGATTGTGGCGTCAC 180
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 242 AAGATGAGTATAAGAGATGTTCTTCATCTGTTTCCTCTAGGCTATAGATTGTGGCGTTAC 301
Query 181 ACTAAAGAAGAAGCaaaaaaaGGAAGAGTTTCGATGTACGATATCTTCAAAAAGCGTCAA 240
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 302 ACTAAAGAAGAGGCAAAAAAAGGAAGATTTTCGATGTACGATATCTTCAAAAAGCGCCAT 361
Query 241 GTAACAGGCGACCATGGCGTCCCATTAGGTGGAATTGGCGGAGGAAGCATCGGAAGGAGT 300
|||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 362 GTAAGAGGCGACCATGGTGTCCCATTAGGTGGAATTGGTGGAGGAAGCATCGGAAGGAGT 421
Query 301 TACAAAGGTGAATTTCAGCAGTTTAAGCTCTTCCCTAAAGTTTGTGAAGAAGCTCCAATC 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 422 TACAAAGGTGAATTTCAGCAGTTTAAGCTCTTCCCTAAAATTTGTGAAGAAGCTCCAATC 481
Query 361 CTCACTAACCAGTTCTCTGTTTTTGTTAT-GAGATCCGGTGG-TGTGAATTACTCAAGTG 418
||||| ||||||||||||||||||| | | |||| ||||||| | ||| ||||| | ||
Sbjct 482 CTCACAAACCAGTTCTCTGTTTTTG-TGTCGAGACCCGGTGGCT-TGAGCTACTCCACTG 539
Query 419 TTCTATGCCCAACAAAGCCAAAATCTGTAAAAGGTAAAACAGAGGATTTAGGAATAGAAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTCTATGCCCAACAAAGCCAAAATCTGTAAAAGGTAAAACAGAGGATTTAGGAATAGAAT 599
Query 479 CATGGGACTGGAACATGAAAGGGGACAAATCTATGTATCATGCTCTGTATCCGAGGTCTT 538
||||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||
Sbjct 600 CATGGGACTGGAACATGGAAGGGGACAAATCTACCTATCATGCTTTGTATCCAAGGTCTT 659
Query 539 GGACCGTATACAACGAGCCTGACCCTGAACTCAGAATAGTTTCTCGTCAAATTTCGCCTT 598
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 660 GGACCGTATACAACGAGCCTGACCCTGAACTCAGAATAGTTTCTCGTCAAGTGTCGCCTT 719
Query 599 TTATACCACATAATTACAAGGAAAGCAGTCTTCCGGTATCGGTTTTCG-CTTTCACGGTG 657
||||||| ||||| |||||||||||||||||||||||||||||||||| ||| ||| ||
Sbjct 720 TTATACCTCATAACTACAAGGAAAGCAGTCTTCCGGTATCGGTTTTCGAATTT-ACGATG 778
Query 658 AGTAACCTTGGAAAAGAAGAAGCAACGGTTACTTTGCTCTTTACTTGGGAGAACTCAGTG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGTAACCTTGGAAAAGAAGAAGCAACGGTTACTTTGCTCTTTACTTGGGAGAACTCAGTG 838
Query 718 GGAGGAGCTTCTGGTTTAACTGGAGAACACTTCAACTCAACAATGATGGAAAGAGATGGA 777
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 839 GGAGGAGCTTCTGGTTTAACTGGAGAACACTTCAACTCAACAATAATGGAAAGAGATGGA 898
Query 778 GTACATGCAATAGCTTTACATCACAAGACGGACAATGGACACCCGCCAGTTACTTACGCC 837
||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 899 GTACATGCAATAGTTTTACATCACAAGACGGGCAATGGACATCCGCCAGTTACTTACGCT 958
Query 838 ATTGCAGCGCAAGAAACAGAGGATGTTCATGTCTCTGGGTGTTCATGCTTCTTAGTTTCT 897
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 959 ATTGCAGCGCAAGAAACAGAGGATGTTCATGTCTCTGAGTGTCCATGCTTCTTAGTTTCT 1018
Query 898 GGTCATTCTCCTAAAGAAATCACAGCAAGAGAGATGTGGGATGAGATTAAAAAGAACAAA 957
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1019 GGTCACTCTCCTAAAGAAATCACAGCAAAAGAGATGTGGGATGAGATTAAAAAGAACAAA 1078
Query 958 TCATTCGACG-GATTAAACAGCGAGGCAGGCTCACCTTCGAGACCCGGAACATCCATTGG 1016
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1079 TCATTCGACGAG-TTAAACAGCGAACCAGGCTCACCTTCGAGACCCGGAACATCCATTGG 1137
Query 1017 AGCAGCCATAGCTGCTAATGTGAAGGTTCCTCCAGGTTGTGACCGTACTGTCATGTTTTC 1076
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 AGCAGCCATAGCTGCTAAAGTGAAGGTTCCTCCAGGTTGTGACCGTACTGTCACGTTTTC 1197
Query 1077 ACTCTCATGGGATTGTCCTGAGGTGCGGTTCAATGAAAAGACTTACCACAGAAGATACAC 1136
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1198 ACTCTCATGGGACTGTCCTGAGGTGCGGTTCAATGAAAAGACTTACCACAGACGATACAC 1257
Query 1137 AAAATTCTATGGCAACTTAGGCGACGCAGCAGTGAAAATGGCTCGAGATGCTCTTCTGAA 1196
|||||||||||||||||||||||| ||||||||||||||||| || || |||||||| ||
Sbjct 1258 AAAATTCTATGGCAACTTAGGCGATGCAGCAGTGAAAATGGCCCGCGACGCTCTTCTAAA 1317
Query 1197 TTATGTTGATTGGGAGTCTCAAATTGAAGCATGGCAAAGCCCTATTCTTTCAGACACTGC 1256
||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 1318 TTACGTTGATTGGGAGTCTCAGATTGAAGCATGGCAAAGCCCTATTCTCTCAGACACTAC 1377
Query 1257 ACTTCCTGACTGGTACCGAGTTACTCTATTCAATGAATTATACTATTTCAACTCCGGAGG 1316
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1378 ACTTCCTGACTGGTACCGAGTTACTCTATTCAACGAACTATACTATTTCAACTCCGGAGG 1437
Query 1317 AACTATCTGGACAGATGGCTTGCCTCCCAAGGAACGCATAGAAAGAAGCAAGATTATAAA 1376
|||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 1438 AACTATCTGGACAGATGGCTTGCCTCCCAAGGAAAGCATAGAAAGAAGCAAGGTTACAAA 1497
Query 1377 TACAGAACAGAACAACATTGTTACAGAGCTCTTCAAGAAAATCAATGTGATTTGTGATCA 1436
||||||||||||| ||||||||| ||| |||||| |||||||||||| | ||||||| ||
Sbjct 1498 TACAGAACAGAACGACATTGTTATAGACCTCTTCCAGAAAATCAATGCGGTTTGTGAGCA 1557
Query 1437 GATTCATTCTCCTCAGTCCTTGAACGCGGAAGAGCACATCGGGCAATTCATCTACCTCGA 1496
|||| |||||||||| |||| |||| |||||||| |||| || |||||||||||||| ||
Sbjct 1558 GATTTATTCTCCTCAATCCTCGAACTCGGAAGAGAACATTGGCCAATTCATCTACCTAGA 1617
Query 1497 AGGAATTGAGTATCTAATGTACAACACTTACGACGTTCACTTCTATTCTTCATTTGCACT 1556
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1618 AGGAATTGAGTATCTAATGTACAACACTTACGATGTGCACTTCTATTCTTCATTTGCACT 1677
Query 1557 TCTCAGTCTCTTCCCTAAGCTCGAACTCAGCATCCAAAGAGACTTTGCAGCAACAGTTCT 1616
|||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1678 TCTCAGTCTCTTTCCTAAGCTCGCACTCAGTATCCAAAGAGACTTTGCAGCAACAGTTCT 1737
Query 1617 GTTTCAAGATCCCACCAAGAAACAGATCATGAGTTCCGGTGAGTGGGTTCCTAGAAAACT 1676
| |||||||||| ||||||||| |||||||||| ||||||||||||||| | ||||||||
Sbjct 1738 GATTCAAGATCCAACCAAGAAAAAGATCATGAGCTCCGGTGAGTGGGTTACAAGAAAACT 1797
Query 1677 TCTTGGATCTATTCCTCATGATATAGGTCTAAACGATCCGTGGCTTGAACTAAACGAATA 1736
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1798 TCTTGGATCTGTTCCTCATGATATAGGTCTAAACGATCCGTGGCTAGAACTAAACGAATA 1857
Query 1737 TAACTTCTTTAACACGGATCGTTGGAAAGACTTGAACGCCAAGTTTGTTCTTCAAGTCTA 1796
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 TAACTTCTTCAACACGGATCGTTGGAAAGACTTGAACGCCAAGTTTGTTCTTCAAGTCTA 1917
Query 1797 CAGAGACGTGGTTTCAACCGGCGATCAGAGCTTTGCGAAAGCGGTTTGGCCGTCTGTTTA 1856
||||||||||||| | || ||||||||| ||||| |||||||||||||||||||||||
Sbjct 1918 CAGAGACGTGGTTGCTACTAACGATCAGAGTTTTGCTAAAGCGGTTTGGCCGTCTGTTTA 1977
Query 1857 CACAGCAGTTGCTTACTTAGATCAGTTCGATAAGGACGAGGATGGGATGATCGAAAACGA 1916
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1978 CACAGCAGTTGCTTACTTAGATCAGTTCGATAAGGACGAGGACGGGATGATCGAAAACGA 2037
Query 1917 AGGGTTTCCGGATCAAACATACGATGCTTGGAGTGTTACAGGGGTTAGTGCTTATTGTGG 1976
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2038 AGGGTTTCCGGATCAGACATATGATGCTTGGAGTGTTACAGGGGTTAGTGCTTATTGTGG 2097
Query 1977 CGGTCTCTGGGTCGCTGCTCTTCAAGCTGCGTCTGCGTTTGCTCGTATTGTTGGGGAAAA 2036
|||||| |||||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 2098 CGGTCTTTGGGTCGCTGCTCTACAAGCTGCGTCTGCATTTGCTAGTATTGTTGGGGAAAA 2157
Query 2037 CGGTGTTGCCATTTATTTCAATACAAAGTATAAAAAGGCGAAAAGCGTTTACGAGAAGCT 2096
|| |||||||||||| |||||| ||||||| |||||||||| | ||||||||||||||
Sbjct 2158 CGCTGTTGCCATTTACTTCAATGCAAAGTACGAAAAGGCGAAGATTGTTTACGAGAAGCT 2217
Query 2097 ATGGAATGGTTCTTACTTCAATTATGACGATAGTGGTAGCGGCTCGAGCTCCTCGATTCT 2156
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2218 ATGGAATGGTTCTTACTTCAATTATGACGATAGTGGTAGTGGCTCGAGCTCTTCGATTCT 2277
Query 2157 TGCTGATCAGTTGGCTGGACAATGGTATGCGA-GAGCGTGTGGATTGAAGCCGATAACGG 2215
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2278 TGCTGATCAGTTGGCTGGACAATGGTATGC-ACGAGCGTGTGGATTGAAGCCGATAACGA 2336
Query 2216 AAGAAGAATGGATAAAGAAAGCACTCGAGACGATCTATGAGTTCAATGTAATGAAAGTGA 2275
||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
Sbjct 2337 AAGAAGAATGGATAAAGAAAGCACTAGAGACGATCTATGAGTTCAATGTGATGAAAGTTA 2396
Query 2276 AAGGAGGGACACGAGGGGCAGTGAACGGAATGTCACCGGACGGACAAGTGGACACGAACT 2335
|||||||||||||||| |||||||||||||||||| |||| ||| ||||||| || || |
Sbjct 2397 AAGGAGGGACACGAGGCGCAGTGAACGGAATGTCAACGGAAGGAAAAGTGGATACAAATT 2456
Query 2336 CATTGGTTTCAAAGGAGGTTTGGGCTGGGACTACTTACTCTGTTGCAGCTTGTATGATTC 2395
| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2457 CGTTGGTTTCAAAGGAAGTTTGGGCTGGTACTACTTACTCTGTTGCAGCTTGTATGATTC 2516
Query 2396 AAGAAGGGCAAAGAGAAAAAGGGTTTCAGACAGCAAGTGGAATCTACGAGGCTGTTTGGT 2455
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2517 AAGAAGGGCAAAGAGAAAAAGGGTTTCAGACAGCAAGTGGAATCTACGAGGCTATTTGGT 2576
Query 2456 CAGATCGTGGTCTCAGTTGCTCATTTCAGACACCAGAAGCCTGGAATATGAATGATGAAT 2515
| |||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 2577 CTGATCGTGGTCTCAGTTGCTCGTTTCAGACACCAGAAGCGTGGAACATGAATGATGAAT 2636
Query 2516 ACAGGTCTTTGTGTTATATGAGACCTCTTGCTATATGGTCTATACAATGGGCATTGACAC 2575
|||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2637 ACAGATCTCTGTGTTATATGAGACCTCTTGCTATATGGGCTATACAATGGGCATTGACAC 2696
Query 2576 GAACACAATCTTTTGGagaagagaaggaaaagttagtgaaaggaga--a-gaagaagaaa 2632
|||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||
Sbjct 2697 GAACACAATCTTTTGGAGAAGAGAAGCAAAAGTTAGTGGCAGGAGATGAAGAAGAAGAAA 2756
Query 2633 gTGATTTGTTGCTAAGACAACACAAAGGGTTCAAAGATGTGGCTCGTTTTGTGAAAATAG 2692
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2757 GTAATTTGTTGTTAAGACAACACAAAGGGTTCAAAGATGTGGCTCGTTTTGTGAAAATAG 2816
Query 2693 TACCAACGAGAAATGAACATAGAAGCCGTCTCCAACACACGTACGAGGCCGTCCTAAATA 2752
|||||||||| |||| |||||||||||||||||||||||||||||| |||| || || |
Sbjct 2817 TACCAACGAGCAATGTGCATAGAAGCCGTCTCCAACACACGTACGAGACCGTTCTCAAGA 2876
Query 2753 TTCTCCGCTT 2762
|||||||||
Sbjct 2877 CTCTCCGCTT 2886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137407256877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5