BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327188

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10130.1 | Symbols:  | DNAJ heat shock N-terminal domain-con...   806    0.0  


> AT4G10130.1 | Symbols:  | DNAJ heat shock N-terminal domain-containing 
protein | chr4:6320634-6321643 REVERSE LENGTH=1010
Length=1010

 Score =  806 bits (436),  Expect = 0.0
 Identities = 510/545 (94%), Gaps = 7/545 (1%)
 Strand=Plus/Plus

Query  1    ATGCTTTTCGGTGAGAATTGTGTTCACGAGACATACTATGAGATTCTCTCAGTGAAAGAA  60
            |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct  161  ATGCTTGTCGGTGAGAATTGTGTTCACGAGACATACTACGAGATTCTCTCCGTGAAAGAA  220

Query  61   GATGCGAGCTATGAAGAAATCCGCAATAGCTACCGTTCTGCGATTCTCCACTCTCATCCA  120
            ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct  221  GATGCTAGCTATGAAGAAATCCGAAATAGCTATCGTTCTGCGATTCTCCACTCTCATCCA  280

Query  121  GATAAGCTTAACAACAACAATTCTCG-TCGTACCTCAGACGATGAGAAGTTTCTGAAGAT  179
            ||||||| |  |||||| | |||||| || || ||||||||| |||||||||||||||||
Sbjct  281  GATAAGC-T--CAACAATACTTCTCGTTC-TAGCTCAGACGACGAGAAGTTTCTGAAGAT  336

Query  180  TCAAAAAGCTTGGGAAGTTTTAAGTGATGCAGAGCTACGTGTAGTTTACGATAATGATCT  239
            ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||
Sbjct  337  TCAAAAAGCTTGGGAAGTTCTAAGCGATGCAGAGCTACGTGTAGTTTATGATAATGATCT  396

Query  240  TAGATCTTCAAGACATGATGGACTCACTGCTGATGAGATAAGTATTGAGGATATGTCAGT  299
            |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct  397  TAGATCTTCAAGACATGATGGAATCACTGCTGATGAGATTAGTATTGAGGATATGTCAGT  456

Query  300  GGAGATTACTGGTGAAGTTATTGATCTTTTTTATCAGTGTAGGTGTGGTGATTACTTTTG  359
            ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct  457  GGAGATTACTGGTGATGTGATTGATCTTTTTTATCAGTGTAGGTGTGGTGATTACTTTTG  516

Query  360  TGTTGATTCTAGTGAGTTAGGAACAATGGGGTTTGCTTTGTTGAGAGATGGTGATTGTGT  419
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  517  TGTTGATTCTAGTGAGTTAGGAACAATGGGGTTTGCTTTGTTGAGAGATGGTGATTTTGT  576

Query  420  TCATGTTAAGAGATTGGGTACTTTTGTTGCGTCTGTTGTTCTTCCTTGCGGTTCTTGTTC  479
            | ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||
Sbjct  577  TTATGTTAAGAGATTGGGTGCTTTTGTGGCGTCTGTTGTTCTTCCTTGTGGTTCTTGTTC  636

Query  480  TTTGAAAACACGAGTTTGGGTTGATTCGGATATGAAGATTTCTTTTCAAG-ATGATCTGT  538
            ||||||||||||||||||||||||||| |||||||||||| || | | || ||| ||| |
Sbjct  637  TTTGAAAACACGAGTTTGGGTTGATTCTGATATGAAGATTCCTAT-CTAGGATGGTCTAT  695

Query  539  TGTGA  543
            |||||
Sbjct  696  TGTGA  700



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5