BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327206
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
AT3G45800.1 | Symbols: | Plant protein 1589 of unknown functio... 664 0.0
AT2G11620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 460 1e-128
AT2G29605.1 | Symbols: | Plant protein 1589 of unknown functio... 403 2e-111
AT2G29850.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 379 3e-104
AT2G11623.1 | Symbols: | Plant protein 1589 of unknown functio... 226 4e-58
> AT3G45800.1 | Symbols: | Plant protein 1589 of unknown function
| chr3:16829482-16832207 REVERSE LENGTH=1773
Length=1773
Score = 664 bits (359), Expect = 0.0
Identities = 653/787 (83%), Gaps = 52/787 (7%)
Strand=Plus/Plus
Query 10 CCATCTCGTCACAATCT-TCTCTGCAGC-TGCAGTCATGATGTTTCACAGATCATAGACT 67
||||||||||||||| | |||||||||| | ||||||| ||||||| ||| |||||||
Sbjct 313 CCATCTCGTCACAAT-TATCTCTGCAGCAT-CAGTCATAATGTTTCTGAGACCATAGAC- 369
Query 68 TTA-TAAAGAACATAATCGAGACATGTATTCAAAAGTACATGAGTTTGGAGGAAACGGTA 126
| | |||||| ||||||||||||||||| | ||||||||||||||||| ||||| ||
Sbjct 370 AAAGTTAAGAACTTAATCGAGACATGTATTTACAAGTACATGAGTTTGGAAGAAACAGTG 429
Query 127 ACATATATGGAGGACAATCACAAGATTAGTCACCATCTCACCA-AACCAATATGGGAGCA 185
|||||| |||||||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct 430 ACATATCTGGAGGACAATCACAATATTAGTCACCATCTCACCATAA-CAATATGGGAGCA 488
Query 186 GCTTCAGAAAGAGAGTCCAGAGTTTTTCAACAAGTACCACTTAAAACGCGAATTAGCGCT 245
|||||||||||||||||||||||||||||| |||||| |||| | | | ||
Sbjct 489 GCTTCAGAAAGAGAGTCCAGAGTTTTTCAAGAAGTACTACTT----C-C-----A---CT 535
Query 246 TT-CTCTGATGGTCGAGCATGGAGCTCTTGATATCAATACTGCATCATATACACTCAAGA 304
|| ||||||||||||| |||||| ||||||||| ||||||| | || ||||||
Sbjct 536 TTAGTCTGATGGTCGAGAATGGAGATCTTGATATTGGTACTGCA-C-----CATTCAAGA 589
Query 305 AtttttttC-GTCAAGATCCTGAAGGAGCTCATCTCTTGGAGAAACTAGCTAATACTCCT 363
| |||| || |||||||||||||||||||||||||||||| ||||||||| ||||| |||
Sbjct 590 A-TTTTCTCGGTCAAGATCCTGAAGGAGCTCATCTCTTGGTGAAACTAGCGAATACACCT 648
Query 364 TCTGATATGTCAGAGGTGAGTCTTTCAAGCTTGGCAATGTTGGTATTAGATGATACAAAT 423
||||||| ||||||| |||||| |||||||||||||| ||||| ||| ||||||||| |
Sbjct 649 TCTGATAGGTCAGAGATGAGTCCTTCAAGCTTGGCAACGTTGGCATTGGATGATACACCT 708
Query 424 GGTCCAACAGTAAACCAGTGGCAGATTCCTAATGATCAGCAACATCAGTTTCAG-CATTA 482
|||| |||||||||| ||| |||||||||||||||||| ||| |||| ||||| | |||
Sbjct 709 GGTCTAACAGTAAACAAGTTGCAGATTCCTAATGATCATCAAAATCAATTTCATTC-TTA 767
Query 483 TCAATGGTCTACTACAACTGTTCATCTACCTTTAAACCGGTTGCCGATTCCTGATGGTCA 542
||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||||
Sbjct 768 TCAATGGTCTACTACAACTAATCATATACCTTTAAACCAATTGCCGATTCCAAATGGTCA 827
Query 543 ACAAAATCATCTTCATCAAAATCAATGGTCTACACCAAATAATCATGCTTGTACCAATCT 602
||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |||
Sbjct 828 ACAAAATCATCTTCATCAAAACCAATGGTCTACACCAAATCATCAAGCTTGTAC---TCT 884
Query 603 TGGAGCTCCTACTGTTCCACCGGCAGCTAATGATCAATGGTTTCCTTATAGTGATCC-TG 661
|||||||||||| |||| ||| ||||||||||||||| |||| | | ||| |
Sbjct 885 TGGAGCTCCTACCGTTCAACCAGCAGCTAATGATCAAA-----CCTTTT--TC-TCCATA 936
Query 662 CGTGTACCAATCTTGGAGCTCCTACCGATGCACCAGCAGCTAATGATCAAC-GGTTGACA 720
| |||||||||| ||||||||||||| | |||||| |||||||||||| | |||| |
Sbjct 937 -G-GTACCAATCTGGGAGCTCCTACCGTTCCACCAGGAGCTAATGATCA-CTGGTTTCCT 993
Query 721 GATTTTGATCCTGCATATTACGA-TCCTGTATATTCAGCCGTTGCACCAGTAGCTACT-G 778
|| ||||||||| | | || | || || | | | |||||| |||||| ||||| | |
Sbjct 994 TATAGTGATCCTGCGTGT-ACCAATCTTGGAGCTCCTGCCGTTCCACCAGAAGCTAATAG 1052
Query 779 CTCAATG 785
||||||
Sbjct 1053 -TCAATG 1058
Score = 409 bits (221), Expect = 4e-113
Identities = 351/411 (85%), Gaps = 19/411 (5%)
Strand=Plus/Plus
Query 593 GTACCAATCTTGGAGCTCCTACTGTTCCACC-GGCAGCTAATGATCAATGGTTTCCTTAT 651
|||||||||| ||||||||||| |||||||| || |||||||||||| ||||||||||||
Sbjct 938 GTACCAATCTGGGAGCTCCTACCGTTCCACCAGG-AGCTAATGATCACTGGTTTCCTTAT 996
Query 652 AGTGATCCTGCGTGTACCAATCTTGGAGCTCCTACCGATGCACCAGCAGCTAAT-GATCA 710
||||||||||||||||||||||||||||||||| ||| | |||||| ||||||| | |||
Sbjct 997 AGTGATCCTGCGTGTACCAATCTTGGAGCTCCTGCCGTTCCACCAGAAGCTAATAG-TCA 1055
Query 711 ACGGTTGACAGATTTTGATCCTGCATATTACGATCCTGT---ATATTCAGCCGTTGCACC 767
| ||||| || || ||||| ||| ||| || ||||||| ||||||| ||| ||||||
Sbjct 1056 ATGGTTGCCATATACTGATCATGCGTATAACTATCCTGTTGTATATTCAACCGGTGCACC 1115
Query 768 AGTAGCTACTGCTCAATGCCCAACATCTAATGAT--C-TTGCT-TA--TACTAGAGCTCT 821
|| ||| ||||||||||| ||||||||||||||| | || | || |||| ||||||
Sbjct 1116 AGCAGCCACTGCTCAATGGCCAACATCTAATGATTTCCTTCCCATAGATACTGGAGCTCC 1175
Query 822 AACTGTTGCAAAAGCACCTACTGCGGCATTTGACCATTTTACAGATGAGTTT-GGAGACG 880
|||| ||||||||| ||||||||||||||||||||||||| || ||| |||| ||||| |
Sbjct 1176 AACTTTTGCAAAAGTACCTACTGCGGCATTTGACCATTTTGCAAATG-GTTTTGGAGAAG 1234
Query 881 ATATTGAA-AATAGC-GTCCCAAATTTCCAGCAGATGGATCCTTCAACAGCAGAACAACT 938
||||| || |||||| | |||||||||||||| ||||||||||||||||||| ||| |||
Sbjct 1235 ATATT-AACAATAGCAG-CCCAAATTTCCAGCCGATGGATCCTTCAACAGCAAAACTACT 1292
Query 939 GACGCAACTCGAGCACCTGCTAGATGACCAATATGGACAATACGAACTGCC 989
|| |||||||| ||||||| | | |||| ||||||||||||| |||||||
Sbjct 1293 AACACAACTCGACCACCTGCAACAAGACCCATATGGACAATACCAACTGCC 1343
> AT2G11620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Plant protein 1589 of unknown function
(TAIR:AT3G45800.1); Has 56 Blast hits to 38 proteins in
15 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi -
0; Plants - 29; Viruses - 0; Other Eukaryotes - 17 (source:
NCBI BLink). | chr2:4658445-4660777 FORWARD LENGTH=1476
Length=1476
Score = 460 bits (249), Expect = 1e-128
Identities = 521/645 (81%), Gaps = 47/645 (7%)
Strand=Plus/Plus
Query 364 TCTGATATGTCAGAGGTGAGTCTTTCAAGCTTGGCAATGTTGGTATTAGATGATACAAAT 423
||||||| ||||||| |||||| |||||||||||||| ||||| ||| ||||||||| ||
Sbjct 76 TCTGATAGGTCAGAGATGAGTCCTTCAAGCTTGGCAACGTTGGCATTGGATGATACACAT 135
Query 424 GGTCCAACAGTAAACCAGTGGCAGATTCCTAATGATCAGCAACATCAGTTTCA-GCATTA 482
|||| |||| ||||| ||| |||||||||||||||||||||| |||| ||||| | |||
Sbjct 136 GGTCTAACAATAAACAAGTTGCAGATTCCTAATGATCAGCAAAATCAATTTCATTC-TTA 194
Query 483 TCAATGGTCTACTACAACTGTTCATCTACCTTTAAAC-CGGTTGCCGA-TTCCTGA-TGG 539
||||||||||||||||||| |||| |||| || || | | || || |||| | |
Sbjct 195 TCAATGGTCTACTACAACTAATCATATACC-TTGTACTC-G-TG--GAGCTCCT-ACCGT 248
Query 540 TCAA-CAAAATCATCTTCATCAAAATCAATGGTCTACACCAAATAATCATGCTTGTACCA 598
|||| || | | | | ||| ||| | | | | | || || | | |||||
Sbjct 249 TCAACCAGCAGC-TAATGATC-AAA-C-CT--TTTTCTCC-----AT-A-G---GTACCC 292
Query 599 ATCTTGGAGCTCCTACTGTTCCACC-GGCAGCTAATGATCAATGGTTTCCTTATAGTGAT 657
|||| ||||||||||| |||||||| || |||||||||||| ||||||||||||||||||
Sbjct 293 ATCTAGGAGCTCCTACCGTTCCACCAGG-AGCTAATGATCACTGGTTTCCTTATAGTGAT 351
Query 658 CCTGCGTGTACCAA-TCTTGGAGCTCCTACCGATGCACCAGCAGCTAATGATCAACGGTT 716
|||||||||||||| || ||||||| || ||| | ||||||||| ||||| |||| ||||
Sbjct 352 CCTGCGTGTACCAATTC-TGGAGCTTCTGCCGTTCCACCAGCAGATAATGGTCAATGGTT 410
Query 717 GACAGATTTTGATCCTGCATATTACGAT-C--CTGTATATTCAGCCGTTGCACCAGTAGC 773
| || || |||||| | ||| || || | |||||||||| ||| |||||||| |||
Sbjct 411 GCCATATACAGATCCTACGTATAACTATACTGTTGTATATTCAACCGGTGCACCAGCAGC 470
Query 774 TACTGCTCAATGCCCAACATCTAATGA--T-CTT-GC-T-TATACTAGAGCTCTAACTGT 827
||||||||||| |||||||||||||| | ||| | | ||||| |||||| |||| |
Sbjct 471 CACTGCTCAATGGCCAACATCTAATGATTTCCTTCCCATAGATACTCGAGCTCCAACTTT 530
Query 828 TGCAAAAGCACCTACTGCGGCATTTGACCATTTTACAGATGAGTTT-GGAGACGATATTG 886
|||||||||||||||||||||||||||||||||| || ||| |||| ||||| ||||||
Sbjct 531 TGCAAAAGCACCTACTGCGGCATTTGACCATTTTGCAAATG-GTTTTGGAGAAGATATT- 588
Query 887 AA-AATAGC-GTCCCAAATTTCCAGCAGATGGATCCTTCAACAGCAGAACAACTGACGCA 944
|| |||||| | |||||||||||||| ||||||||||||||||||| ||| ||| || ||
Sbjct 589 AATAATAGCAG-CCCAAATTTCCAGCCGATGGATCCTTCAACAGCAAAACTACTAACACA 647
Query 945 ACTCGAGCACCTGCTAGATGACCAATATGGACAATACGAACTGCC 989
|||||| ||||||| | | |||| ||||||||||||| |||||||
Sbjct 648 ACTCGACCACCTGCAACAAGACCCATATGGACAATACCAACTGCC 692
> AT2G29605.1 | Symbols: | Plant protein 1589 of unknown function
| chr2:12657909-12660087 REVERSE LENGTH=1206
Length=1206
Score = 403 bits (218), Expect = 2e-111
Identities = 365/435 (84%), Gaps = 14/435 (3%)
Strand=Plus/Plus
Query 555 TCATCAAAATC--A-ATGGTCTACACCAAATAATCATGCTTGTACCAATCTTGGAGCTCC 611
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 429 TCAGCAAAATCATATATGGTCTACACCAAATAATCATGCTTGTACCAATCTTGGAGCTTC 488
Query 612 TACTGTTCCACCGGCAGCTAATGATCAATGGTTTCCTTATA-GTGATCCTGCGTGTACCA 670
||| ||||||| |||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 489 TACCATTCCACCAGCAGCTAATGATCAATGGTTTCCTTATAAG-GATCCTGCGTGTTCCC 547
Query 671 ATCTTGGAGCTCCTACCGATGCACCAGCAGCTAATGATCAACGGTTGACAGATTTTGATC 730
||||||||||||||| || | |||||| |||| ||| |||| |||| || || |||||
Sbjct 548 ATCTTGGAGCTCCTATCGTTCCACCAGAAGCTTATGGTCAATTGTTGCCATATACTGATC 607
Query 731 CTGCATATTACGATCCTGTA-TAT-T-CAGCCGTTGCACCAGTAGCTACTGCTCAATGCC 787
||| |||||| |||| ||| ||| | || ||| |||||||| ||||||| ||||||| |
Sbjct 608 TTGCGTATTACTATCCAGTACTATATTCAACCGCTGCACCAGCAGCTACTACTCAATGGC 667
Query 788 CAACATCTAATGATCTTGCTTATACTAGAGCTCTAACTGTTGCAAAAGCACCTACTGCGG 847
| ||||||| |||| ||||||||||| ||| || |||| || ||||||||||||||||||
Sbjct 668 CGACATCTACTGATTTTGCTTATACTGGAGGTCCAACTCTTCCAAAAGCACCTACTGCGG 727
Query 848 CATTTGACCATTTTACAGATGAGTTT-GGAGACGATATTGAAAATAGC-GTCCCAAATTT 905
||||||| ||||||| ||||| |||| ||||| |||||||| |||||| | |||||||||
Sbjct 728 CATTTGATCATTTTAGAGATG-GTTTCGGAGAAGATATTGACAATAGCAG-CCCAAATTT 785
Query 906 CCAGCAGATGGATCCTTCAACAGCAGAACAACTGACGCAACTCGA-GCACCTGCTAGATG 964
||||||||||||||||| | |||| | || || |||| || ||| | || ||||| | |
Sbjct 786 CCAGCAGATGGATCCTTTAGCAGCCGCACTACAAACGCTACCCGATG-ACATGCTACAAG 844
Query 965 ACCAATATGGACAAT 979
| | |||| |||||
Sbjct 845 AGCTATATCAACAAT 859
Score = 287 bits (155), Expect = 2e-76
Identities = 218/248 (88%), Gaps = 5/248 (2%)
Strand=Plus/Plus
Query 1 ATGAGCTATCCATCTCGTCACAATCTTCTCTGCAGCTGC-A--GTCATGATGTTTCACAG 57
|||||| | |||| ||||| ||||||||||||||||||| | ||| | | |||||| ||
Sbjct 1 ATGAGCGAACCATGTCGTCTCAATCTTCTCTGCAGCTGCAATCGTCGTAACGTTTCAGAG 60
Query 58 ATCATAGACTTTATAAAGAACATAATCGAGACATGTATTCAAAAGTACATGAGTTTGGAG 117
| ||||||| ||||||||||||||||| ||||||||| | |||||||||||| ||||
Sbjct 61 ACCATAGACACTATAAAGAACATAATCGCGACATGTATCCGCAAGTACATGAGTCTGGAA 120
Query 118 GAAACGGT-AACATATATGGAGGACAATCACAAGATTAGTCACCATCTCACCAAACCAAT 176
||||| || || |||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 121 GAAACAGTGAA-TTATATGCAGGAAAATCACAAGATTAGTCACCATCTCACCAAACCAAT 179
Query 177 ATGGGAGCAGCTTCAGAAAGAGAGTCCAGAGTTTTTCAACAAGTACCACTTAAAACGCGA 236
||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||
Sbjct 180 ATGGGAGCAGCTTCAGAAAGAGAATGCAGATTTTTTCAACAAGTACCACTTAATACGCGA 239
Query 237 ATTAGCGC 244
||||||||
Sbjct 240 ATTAGCGC 247
> AT2G29850.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: Plant protein 1589 of unknown function
(TAIR:AT2G29605.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa
- 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes
- 9610 (source: NCBI BLink). | chr2:12734725-12736394 FORWARD
LENGTH=855
Length=855
Score = 379 bits (205), Expect = 3e-104
Identities = 351/419 (84%), Gaps = 19/419 (5%)
Strand=Plus/Plus
Query 397 GCAATGTTGGTATTAGATGATACAAATGGTCCAACAGTAAACCAGTGGCAGATTCCTAAT 456
||||||| || ||| |||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 43 GCAATGTCGGAATTGGATGATACAAATGGTCTAACAGTAAACCAGTCGCAGAATCCTAAT 102
Query 457 GATCAGCAACATCAGTTTCA-GCATTATCAATGGTCTACTACAACTGTTCATCTACCTTT 515
||||||||| |||| ||||| | || || ||||| ||||||||| |||| |||||||
Sbjct 103 GATCAGCAATATCAATTTCATTC-TTGTCGGTGGTCAACTACAACTAATCATATACCTTT 161
Query 516 AAACCGGTTGCCGATTCCTGATGGTCAACAAAATCATCTTCATCAAAATCAATGGTCTAC 575
||||| ||||||||||||| ||||||| | ||| | ||||| | |||||||||
Sbjct 162 AAACCAGTTGCCGATTCCTAATGGTCAGC-AAA--A---TCATC----T--ATGGTCTAC 209
Query 576 ACCAAATAATCATGCTTGTACCAATCTTGGAGCTCCTACTGTTCCACCGGCAGCTAATGA 635
|||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| ||
Sbjct 210 ACCAAATAATCATGCTTGTACCAATCTTGGAGCTTCTACCATTCCACCAGCAGCTAACGA 269
Query 636 TCAATGGTTTCCTTATA-GTGATCCTGCGTGTACCAATCTTGGAGCTCCTACCGATGCAC 694
||||||||||||||||| | |||||||||||| ||| ||||||||||||||||| | |||
Sbjct 270 TCAATGGTTTCCTTATAAG-GATCCTGCGTGTTCCAGTCTTGGAGCTCCTACCGTTCCAC 328
Query 695 CAGCAGCTAATGATCAACGGTTGACAGATTTTGATCCTGCATATTACGATCCTGTA-TAT 753
||| |||| ||| |||| |||| || || ||||||||| |||||| |||| ||| |||
Sbjct 329 CAGAAGCTTATGGTCAATTGTTGCCATATACTGATCCTGCGTATTACTATCCAGTACTAT 388
Query 754 -T-CAGCCGTTGCACCAGTAGCTACTGCTCAATGCCCAACATCTAATGATCTTGCTTAT 810
| || ||| |||||||| ||||||| |||||| || ||||||| |||| ||||||||
Sbjct 389 ATTCAACCGCTGCACCAGCAGCTACTATTCAATGGCCGACATCTACTGATTTTGCTTAT 447
> AT2G11623.1 | Symbols: | Plant protein 1589 of unknown function
| chr2:4660870-4661415 REVERSE LENGTH=333
Length=333
Score = 226 bits (122), Expect = 4e-58
Identities = 145/156 (93%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 73 AAGAACATAATCGAGACATGTATTCAAAAGTACATGAGTTTGGAGGAAACGGTA-ACATA 131
|||||| |||| |||||||| ||| | ||||||||||||||||| ||||||| | |||||
Sbjct 139 AAGAACTTAATTGAGACATGCATTTACAAGTACATGAGTTTGGAAGAAACGG-AGACATA 197
Query 132 TATGGAGGACAATCACAAGATTAGTCACCATCTCACCAAACCAATATGGGAGCAGCTTCA 191
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 TGTGGAGGACAATCACAAGATTAGTCACCATCTCACCAAACCAATATGGGAGCAGCTTCA 257
Query 192 GAAAGAGAGTCCAGAGTTTTTCAACAAGTACCACTT 227
|||||||||||||||||||||||| |||||| ||||
Sbjct 258 GAAAGAGAGTCCAGAGTTTTTCAAGAAGTACTACTT 293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54869195685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5