BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327213

Length=279
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10457.1 | Symbols: SCRL1 | SCR-like 1 | chr4:6466900-646727...   422    1e-117


> AT4G10457.1 | Symbols: SCRL1 | SCR-like 1 | chr4:6466900-6467270 
REVERSE LENGTH=279
Length=279

 Score =  422 bits (228),  Expect = 1e-117
 Identities = 262/279 (94%), Gaps = 0/279 (0%)
 Strand=Plus/Plus

Query  1    ATGAAATATGGGGTTTTGTTTATGGTTTCTTGTGGTGTCATGTTTCTTATTCTAAGCCAT  60
            ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGAAATATGGAGTTTTGTTTATGGTTTCTTGTGGTGTCATGTTTCTAATTCTAAGCCAT  60

Query  61   GTTGAAGAAGCTGACGCCATGAAAAAGTTTGGGTGCAACACTACACACCCATTCCCTGGA  120
            |||||||| | ||| |||||||| |||||||||||||||||||||||||| || ||||||
Sbjct  61   GTTGAAGAGGTTGAAGCCATGAAGAAGTTTGGGTGCAACACTACACACCCTTTTCCTGGA  120

Query  121  AAATGCGGAAATAATGGAAAGAGTTCTTGCGTAAGTGACATGAAAAAGCTTCCTAGCGCG  180
            ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| 
Sbjct  121  AAATGTGGAAATAATGGAAAGAGTTCTTGGGTAAGTGACATGAAAAAGCTTCCAAGCGCA  180

Query  181  CCAAAAAATCGTAATATACGTTGCGAATGTTCTGACCGTCCAAGTTTAGCTTGGGGTATG  240
            |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  181  CCAAAAAATCGTGATATACGTTGCGAATGTTCTGACCGTCCAAGTTTAGCTAGGGGTATG  240

Query  241  CCTGGCGAGCGTGTATGTAGATGTCAATATGACTGTTAA  279
            |||||||||||||||||||||||| | ||||| ||||||
Sbjct  241  CCTGGCGAGCGTGTATGTAGATGTGATTATGATTGTTAA  279



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12818275995


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5