BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327243
Length=873
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10890.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1177 0.0
> AT4G10890.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2439 (InterPro:IPR018838);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT1G43722.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa
- 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink). | chr4:6688833-6693761
FORWARD LENGTH=1933
Length=1933
Score = 1177 bits (637), Expect = 0.0
Identities = 801/878 (91%), Gaps = 19/878 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAGAAGCAGAGATGGATTGCGATGTATACGAAGCACCTCAAGCAGAAGCGAAAG 60
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 721 ATGGCGGAGAAACAGAGATGGATTGCGATGTATACGAAACACCTCAAGCAGAAGCGAAAG 780
Query 61 GTCTATCACGATGGCTTCCTTGATTTGCATATCGCCAGAAAAAAGGTGATGCTTTATGAT 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 781 GTCTATCACGATGGCTTCCTTGATTTACATATCGCCAGAAAAAAGGTGATGCTTTATGAT 840
Query 121 AAGGCCAATAATCTACTCGAGAGCAGAATACTAAAGGCA-GATGAAGTTGTGGACACAGG 179
||| | |||||||||| || ||||| | || |||||| | |||||||||| |||||||
Sbjct 841 GAGGACGATAATCTACTTGAAAGCAGGACGCTTAAGGCATG-TGAAGTTGTGAACACAGG 899
Query 180 TGAAACACTCACATTTCAAGCATATCTTGTGGATATCTGCGATCCTAAGGACGGAAGTAA 239
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 900 TGAAACACTCACATTTCAAGCATATCTTGTGGATATATGCGATCCTAAGGACGGAAGTAA 959
Query 240 GGCTTCATCTGATCCAAAGGTCCAACCAAGTGATCAAGGGTGTGTGCGCAAACCATTTGC 299
||||| ||||| |||||||| |||||||||||||| |||| |||||||||||| |
Sbjct 960 AGCTTCTTCTGAGCCAAAGGTTGAACCAAGTGATCAAAAATGTGCACGCAAACCATTTAC 1019
Query 300 AGTTCTCAGGCCAAATTTCAAGAAAACTTCTCTTCAG-TGTGATGAGAAAAAACCTAACC 358
|||||||||||||||||||||||||| |||||||| | |||||||||||||||||| |||
Sbjct 1020 AGTTCTCAGGCCAAATTTCAAGAAAAGTTCTCTTC-GTTGTGATGAGAAAAAACCTGACC 1078
Query 359 TTGTGAATACATTTTCTTCAAAAAGTCTCAGCCCATCTCACAATATGATTAGAGTATTCA 418
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TTGTGAATAAATTTTCTTCGAAAAGTCTCAGCCCATCTCACAATATGATTAGAGTATTCA 1138
Query 419 AAAAGAGAGAATTGCACAAGTATGGGGCACTGACTCCAGACACTATGAAGTCAACAACAA 478
||||||||||| |||| |||||||||||||||||||||||| | |||||||||
Sbjct 1139 AAAAGAGAGAACTGCATAAGTATGGGGCACTGACTCCAGAC--T-------CAACAACAA 1189
Query 479 AAGGTACTGTACCTCTTGGCTCTGTTGATAAAGAAAGCAATAACCACCCCTTGATCCACT 538
||||||||||| |||||||||| |||||||||||||||||||||||||| |||||| |||
Sbjct 1190 AAGGTACTGTATCTCTTGGCTCAGTTGATAAAGAAAGCAATAACCACCCTTTGATCAACT 1249
Query 539 CTCCGTGCACTGGAACGTCCAGT-GCAGATTCAAGGTTAGAGAAT-GATAAGTTAAGCAA 596
|||| || ||||||| ||| || | ||||||||||||||||||| | ||||||||||||
Sbjct 1250 CTCCATGTACTGGAAGGTCT-GTTGTAGATTCAAGGTTAGAGAATTG-TAAGTTAAGCAA 1307
Query 597 GAACATTCCTCCACACAAGCCTTTACGTGATGTAAATCAGATACTCTCCATTCTACAGAG 656
| | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1308 GGATGTTCCTCCACCCAAGCCTTTACGTGATGTAAATCAGATACTCTCCATTCTTCAGAA 1367
Query 657 ACGGAATGTTACAGAGACATGTTCTGATAATAACCCGAAAACATCAGTGTCTTTA-ACAA 715
|||||||| ||||||||||||||||||||||||| | ||||||| ||| |||| ||||
Sbjct 1368 ACGGAATGCTACAGAGACATGTTCTGATAATAACATGCAAACATCTGTG-CTTTTGACAA 1426
Query 716 AAGTACCTCCAGAATCTGATACCAGCAAAAGACACAAAATGGAGTCTGTTTCAACGAAAG 775
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1427 AAGTACCTCCAGAATCTGAAACCAGCAAAAGACACAAAATGGAGTCTATTTCAACGAAAG 1486
Query 776 AAGCATCTACGGAACAAGTAATGATGAAAGAAGCCTCATCGGCCAGCACAAGAGGTTGCT 835
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1487 AAGCATCTACGGAACAAGTAATGGTGCAAGAAACCTCATCGGCCAGCACAAGAGGTTGCT 1546
Query 836 TAATGAGTGATCCTCCGAGTTTTGACCTCGGAATTTAA 873
|||||||||||||||||||||| |||||||||||||||
Sbjct 1547 TAATGAGTGATCCTCCGAGTTTCGACCTCGGAATTTAA 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42598556656
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5