BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327245

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10895.1 | Symbols:  | Plant self-incompatibility protein S1...   582    7e-166


> AT4G10895.1 | Symbols:  | Plant self-incompatibility protein 
S1 family | chr4:6693907-6694718 REVERSE LENGTH=526
Length=526

 Score =  582 bits (315),  Expect = 7e-166
 Identities = 395/432 (91%), Gaps = 12/432 (3%)
 Strand=Plus/Plus

Query  1    ATGATAGAAAAAATTATAATATA--TTGCCTCTTGTTCGCCTTTTCAATCCAAAGAACAG  58
            |||||||||||| ||||||||||  ||| | |||||||||||||| ||||||||||||||
Sbjct  9    ATGATAGAAAAATTTATAATATATTTTG-C-CTTGTTCGCCTTTTTAATCCAAAGAACAG  66

Query  59   ACTCTATTCTTGCATTTAGACGTTTTAACATTGAAATTTCAAATCATCTTGAGGGTAACA  118
            ||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct  67   ACTCTATTCTTACATTTAGACGTTTTAACATTGAAATTTCAAATCAACTTGGGGGTAACA  126

Query  119  A-ACAACTTATGGTCCAGTGTAGATCTGGT--GTGAATTCGACCCAG-GTTGTTTTTCTT  174
            | | ||||||||||||||||||||||||||  | ||| ||||||| | ||||||||||||
Sbjct  127  ATA-AACTTATGGTCCAGTGTAGATCTGGTCAG-GAA-TCGACCC-GAGTTGTTTTTCTT  182

Query  175  GCATTCAGTGGTGTGTTCAAATTTCCTATAATACTTGATTTTAAGACATTGGTATGGTGC  234
            |||||||||| ||||||||||  |||| ||| | |||  |||||||||||| ||||||||
Sbjct  183  GCATTCAGTGATGTGTTCAAAGCTCCTTTAAGAATTGGGTTTAAGACATTGATATGGTGC  242

Query  235  AACTTATGGAAGGGACCTGATTTCAAGCAACATGTGAGTTTTGACGCATTTGTTGGGAAA  294
            | ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct  243  ACCTTATGGAAGGGACCTGATTTTAAGCATCATGTAAGTTTTGACGCATTTGTTGGGAAA  302

Query  295  GAGAGTTTTATACATGATGTATGTGGGAGTATGAAGCCTAACACATGTTTCTGGCAAGCG  354
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct  303  GAGAGTTTTATACATGATGTATGTGGGAGTATGAAGCCTAACATATGTTTCTGGCAAGTG  362

Query  355  CAAGACGATGGAATATGGGCACGTAATAATCCAACCGGTGATCTCAAGTTAATGTATAAA  414
            ||||| |||||| ||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct  363  CAAGATGATGGAGTATGGGCACGTAATAATCCAACCGGAGCTCTCAAGTTAATGTATAAA  422

Query  415  TGGAATACATAA  426
            ||||||| ||||
Sbjct  423  TGGAATAAATAA  434



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20207635098


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5