BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327250

Length=579
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G10940.1 | Symbols:  | RING/U-box protein | chr4:6708982-671...   889    0.0  


> AT4G10940.1 | Symbols:  | RING/U-box protein | chr4:6708982-6710923 
REVERSE LENGTH=579
Length=579

 Score =  889 bits (481),  Expect = 0.0
 Identities = 546/578 (94%), Gaps = 2/578 (0%)
 Strand=Plus/Plus

Query  1    ATGGAGCTCGATTTTGACGTTAGTAACTTGGTTGAAGATGAAGCTGCTGAAGTTGAACAT  60
            ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct  1    ATGGAGCTCGATTTTGACGCTAGTAACTTGGTTGAAGATGAAGCTGTTGAAGTTGAACAT  60

Query  61   AATGACATGGCTGGTATTGAAGGGGAACGATGTGGGATTTGCATGGATATAATTATTGAT  120
            ||||  ||| |||  |||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct  61   AATGGTATGACTGAAATTGAAGGGGAAAGATGTGGAATTTGCATGGATATAATTATTGAT  120

Query  121  AGAGGCCTTCTTGATTGCTGTCAGCACTGGTTCTGCTTTGAATGCATTGATAATTGGTCT  180
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGAGGCGTTCTTGATTGCTGTCAGCACTGGTTCTGCTTTGAATGCATTGATAATTGGTCT  180

Query  181  ACGATTATGAACCTATGCCCTCTCTGTCAGAGAGAGTTTCAGTTGATTACATGTGTACCT  240
            |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct  181  ACGATTATGAACCTCTGCCCTCTATGTCAGAGAGAGTTTCAGTTGATTACATGTGTCCCT  240

Query  241  GTGTATGATTCAGGTGAAAGCAGCAAGGTCGATGAGG-TTTCGTTGTCAGGCGATGAAGA  299
            |||| |||||||||||||||||||||||||||||||| ||| ||  ||||| ||||||||
Sbjct  241  GTGTTTGATTCAGGTGAAAGCAGCAAGGTCGATGAGGATTTGGTA-TCAGGAGATGAAGA  299

Query  300  TTGCTGCATTGAAGAGGAGACTGATGCCGTCTCTTCTCCGTCACACTATATTGACGATAC  359
            |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  300  TTGCTGCATTGAGGAGGAGACTGATGTCGTCTCTTCTCCGTCACACTATATTGACGATAC  359

Query  360  ACACTATATTGATGAAAATGCAGTTATCTGTTTAGATGGCGATCTTTGCAAGCTCCGTAA  419
            ||||||||||||||||||||||||| ||||||||||||| |||||||||||| | |||||
Sbjct  360  ACACTATATTGATGAAAATGCAGTTGTCTGTTTAGATGGAGATCTTTGCAAGATTCGTAA  419

Query  420  CACTTTCAGTTACATTGAAGGGGATTCCAACCTTGATACATCAATTGCTTGTGATTCGTG  479
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  420  CACTTTCAGTTACATTGAAGGGGATTCAAACCTTGATACATCAATTGCTTGTGATTCGTG  479

Query  480  TGATACGTGGTATCATGCTATTTGCGTGGGTTTTGACGTAGAAAATGCATCAGAGGATAC  539
            ||||| |||||||||||||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct  480  TGATATGTGGTATCATGCTATTTGTGTGGGTTTTGACGTGGAAAATGCATCTGAGGATAC  539

Query  540  ATGGGTATGTCCGAGTATAGACACTTTGTACCAAATCT  577
            ||||||||||||||||| |||||||||||||||| |||
Sbjct  540  ATGGGTATGTCCGAGTAAAGACACTTTGTACCAATTCT  577



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27829717438


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5