BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg327268

Length=429
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11175.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pr...   623    4e-178


> AT4G11175.1 | Symbols:  | Nucleic acid-binding, OB-fold-like 
protein | chr4:6818087-6819042 FORWARD LENGTH=737
Length=737

 Score =  623 bits (337),  Expect = 4e-178
 Identities = 400/430 (93%), Gaps = 5/430 (1%)
 Strand=Plus/Plus

Query  1    ATGCTTCAACTCTGCTCCGCGTTT-CGTCCTCAACTCCTTCTTCCTCCTCGTCAATTCCG  59
            |||||||||||||||||| | ||| ||||||||||| |||||||||  | ||||||||||
Sbjct  76   ATGCTTCAACTCTGCTCCAC-TTTCCGTCCTCAACTTCTTCTTCCT--T-GTCAATTCCG  131

Query  60   GTTTACTGATGGAATTTTGATTCGCCAAATAAACTTTGTTGGAAGCAATTCAGTTGTGAA  119
             |||||  ||||  ||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct  132  ATTTACAAATGGCGTTTTGATTCCCCAAATAAACTATGTTGCAAGCAATTCAGTTGTGAA  191

Query  120  TCTCCGGCCAGTCATACGGTGCCAGAGAGCGAGCGGAGGTAGAGGAGGAGCTAACAGAAG  179
            | |||||||| | ||||| ||||||||||| |||||||| |||||||||||||| |||||
Sbjct  192  TATCCGGCCAATGATACGATGCCAGAGAGCAAGCGGAGGAAGAGGAGGAGCTAATAGAAG  251

Query  180  CAAACCTGCAAAGCCTCCTGTTAAAGAAGGAAGCAACAAAACAGTAATCGAAGGTTTAGT  239
            ||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct  252  CAAACCTGCTAAGCCGCAAGTTAAAGAAGGAAGCAACAAAACAGTAATCGAAGGTTTAGT  311

Query  240  AACCGAATCACTACCTAATGGAATGTTTAGAGTCGATTTGGAGAATGGTGATAACATTCT  299
            ||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct  312  AACCGAATCGCTACCTAATGGAATGTTTCGAGTCGATTTGGAGAATGGTGACAACATTCT  371

Query  300  TGGTTATATTTGTGGTAAGATTAGGAAGAATTTCATTCGGATACTTCCCGGTGATAAAGT  359
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  372  TGGTTATATTTGTGGTAAGATTAGGAAGAATTTCATTCGGATACTCCCCGGTGATAAAGT  431

Query  360  GAAAGTCGAAATGAGTGTTTATGATTCTACTAAAGGTCGTATCATTTTCAGAATGAGTAG  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  432  GAAAGTCGAAATGAGTGTTTATGATTCTACTAAAGGTCGTATCATTTTCAGAATGAGTAG  491

Query  420  TAGAGACTAA  429
            ||||||||||
Sbjct  492  TAGAGACTAA  501



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20358438345


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5