BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327275
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11280.1 | Symbols: ACS6, ATACS6 | 1-aminocyclopropane-1-car... 2399 0.0
AT4G26200.1 | Symbols: ACS7, ATACS7 | 1-amino-cyclopropane-1-ca... 86.1 9e-16
> AT4G11280.1 | Symbols: ACS6, ATACS6 | 1-aminocyclopropane-1-carboxylic
acid (acc) synthase 6 | chr4:6864097-6866116 FORWARD
LENGTH=1753
Length=1753
Score = 2399 bits (1299), Expect = 0.0
Identities = 1427/1490 (96%), Gaps = 4/1490 (0%)
Strand=Plus/Plus
Query 1 ATGGTGTCTTTTGCAACAGAGAAGAAGCAAGATCTGAATCTATTGTC-AAGAATCGCCTC 59
|||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 72 ATGGTGGCTTTTGCAACAGAGAAGAAGCAAGATCTGAATCTATTGTCTAA-AATCGCCTC 130
Query 60 CGGTGACGGTCACGGCGAGAATTCATCTTATTTCGATGGTTGGAAAGCTTATGAAGAAAA 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 131 CGGTGACGGTCACGGCGAGAATTCCTCTTATTTCGATGGTTGGAAAGCTTATGAAGAAAA 190
Query 120 CCCATTTCACCCAATTGATAGACCTGATGGAGTTATTCAAATGGGTCTCGCTGAAAATCA 179
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 191 CCCATTTCACCCAATTGATAGACCTGACGGAGTTATTCAAATGGGTCTCGCTGAAAATCA 250
Query 180 GCTTTGTGGAGATTTGATGCGTAAATGGGTTTTAAAACATCCAGAAGCTTCGATTTGTAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GCTTTGTGGAGATTTGATGCGTAAATGGGTTTTAAAACATCCAGAAGCTTCGATTTGTAC 310
Query 240 ATCAGAAGGTGTGAATCAATTCAGTGACATTGCAATTTTTCAGGATTATCATGGCTTGCC 299
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 311 ATCAGAAGGTGTGAATCAATTCAGTGACATTGCCATTTTTCAAGATTATCATGGCTTGCC 370
Query 300 TAAATTCAGACAAGCAGTAGCGAAATTTATGGAGAAGACAAGAAATAACAAAGTTAAGTT 359
| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 371 TGAATTCAGACAAGCTGTAGCGAAATTTATGGAGAAGACTAGAAATAACAAAGTTAAGTT 430
Query 360 TGATCCTGACCGGATTGTTATGAGCGGCGGCGCTACGGGCGCACACGAGACGGTTGCTTT 419
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 431 TGATCCTGACCGGATTGTTATGAGCGGCGGCGCAACCGGAGCACACGAGACGGTTGCTTT 490
Query 420 CTGTTTAGCTAATCCCGGTGACGGTTTCTTAGTTCCGACTCCTTATTATCCAGGGTTTGA 479
|||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||
Sbjct 491 CTGTTTAGCTAATCCCGGCGATGGTTTCTTAGTTCCAACCCCTTATTATCCAGGGTTTGA 550
Query 480 TAGAGATTTGAGATGGAGAACCGGAGTGAATCTTGTACCGGTTACTTGTCATAGCTCTGA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 551 TAGAGATTTGAGATGGAGAACCGGAGTGAATCTTGTACCGGTTACTTGTCATAGCTCTAA 610
Query 540 TGGGTTTAAGATTACGGTGGAAGCCTTGGAAGCTGCTTATGAAAATGCGAGGAAATCGAA 599
|||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 611 TGGGTTCAAGATTACGGTGGAAGCCTTGGAAGCTGCTTACGAAAACGCGAGAAAATCGAA 670
Query 600 TATTCCGGTTAAGGGTTTACTTGTAACCAATCCTTCGAATCCGCTTGGTACGACGTTAGA 659
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 671 TATTCCGGTTAAGGGTTTACTTGTAACCAATCCTTCAAACCCGCTTGGTACGACGTTAGA 730
Query 660 CCGGGAATGTTTGAAGTCTCTTGTTAACTTCACTAATGACAAAGGGATTCATCTTATTGC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CCGGGAATGTTTGAAGTCTCTTGTTAACTTCACTAATGACAAAGGGATTCATCTTATTGC 790
Query 720 TGATGAGATTTATGCTGCTACTACTTTTGGTCAATCCGAGTTTATAAGCGTTGCGGAAGT 779
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 791 TGATGAGATTTATGCTGCTACTACTTTTGGTCAATCCGAGTTCATAAGTGTTGCGGAAGT 850
Query 780 GATTGAGGAGATCGAGGATTGTAACCGCGATTTGATCCATATTGTGTATAGTCTATCTAA 839
|| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 851 AATCGAGGAGATCGAAGATTGTAACCGCGATTTGATACATATTGTGTATAGTCTATCTAA 910
Query 840 AGATATGGG-CTTGCCTGGTTTAAGAGTTGGTATAGTGTACTCTTACAATGACCGGGTGG 898
||||||||| || |||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 911 AGATATGGGTCT-GCCTGGTTTAAGAGTTGGTATAGTATACTCTTACAATGACAGGGTGG 969
Query 899 TTCAGATCGCAAGGAAAATGTCGAGTTTTGGTCTTGTTTCGTCGCAAACGCAGCATTTGA 958
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 970 TTCAGATCGCAAGGAAAATGTCGAGTTTCGGTCTTGTTTCGTCACAAACGCAGCATTTGA 1029
Query 959 TTTCTAAAATGTTATCCGATGAAGACTTTGTAGACGAGTTCATCTGCGAGAGCAAATTGC 1018
| |||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 1030 TCGCTAAAATGTTATCCGATGAAGAGTTTGTAGACGAGTTTATCCGCGAGAGCAAATTGC 1089
Query 1019 GGTTAGCTGCAAGGCACGCGGAGATAACCACCGGTTTAGATGGTTTAGGCATTGGTTGGT 1078
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1090 GGTTAGCTGCAAGGCACGCTGAGATAACCACCGGTTTAGATGGTTTAGGGATTGGTTGGT 1149
Query 1079 TAAAGGCCAAAGCCGGTTTGTTCTTGTGGATGGATTTAAGAAATCTTTTGAAGACAGCTA 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1150 TAAAGGCCAAAGCCGGTTTGTTCTTGTGGATGGATTTAAGAAATCTTTTGAAGACAGCAA 1209
Query 1139 CATTTGATTCGGAAACCGAACTATGGCGCGTAATTGTCCACCAAGTGAAGCTGAATGTGT 1198
| |||||||||||||||||||||||||| || ||||| |||||||||||||| || ||||
Sbjct 1210 CGTTTGATTCGGAAACCGAACTATGGCGTGTGATTGTTCACCAAGTGAAGCTCAACGTGT 1269
Query 1199 CTCCTGGCGGTTCGTTCCATTGCCACGAACCGGGATGGTTTAGAGTATGTTTTGCAAATA 1258
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1270 CTCCAGGCGGTTCGTTCCATTGCCATGAACCGGGATGGTTTAGAGTATGTTTTGCGAATA 1329
Query 1259 TGGACCACAAGACGATGGAGACGGCTCTAGAGAGGATTAGAGTGTTCACTAGCCAACTTG 1318
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1330 TGGACCATAAGACGATGGAGACAGCTCTAGAGAGGATTAGAGTGTTCACTAGCCAACTTG 1389
Query 1319 AGGAGGAGACTAAACCGATGGCTGCAACAACAATGATGGCTAAGAAGAAGAAGAAGTGTT 1378
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1390 AGGAGGAGACTAAACCGATGGCTGCAACAACTATGATGGCTAAAAAGAAGAAGAAGTGTT 1449
Query 1379 GGCAAAGTAACCTCCGGTTAAGCTTTAGCGACACGAGGCGGTTCGATGATGGCTTCTTCT 1438
|||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1450 GGCAGAGTAACCTCAGGTTAAGCTTTAGTGACACGAGGCGGTTCGATGATGGCTTCTTCT 1509
Query 1439 CGCCTCATTCACCGGTGCCGCCTTCTCCGCTGGTCCGTGCACAGACTTAA 1488
|||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 1510 CGCCTCATTCGCCTGTGCCGCCTTCTCCGCTAGTCCGTGCACAGACTTAA 1559
> AT4G26200.1 | Symbols: ACS7, ATACS7 | 1-amino-cyclopropane-1-carboxylate
synthase 7 | chr4:13275307-13277188 FORWARD LENGTH=1586
Length=1586
Score = 86.1 bits (46), Expect = 9e-16
Identities = 59/65 (91%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 445 TTCTTAGTTCCGACTCCTTATTATCCAGGGTTTGATAGAGATTTGAGATGGAGAACCGGA 504
||| ||||||| || || ||||||||||| || |||||||||||||||||||||||||||
Sbjct 458 TTC-TAGTTCCCACACCGTATTATCCAGGATTCGATAGAGATTTGAGATGGAGAACCGGA 516
Query 505 GTGAA 509
|||||
Sbjct 517 GTGAA 521
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5