BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327291
Length=309
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11485.1 | Symbols: LCR11 | low-molecular-weight cysteine-ri... 383 6e-106
AT4G11760.1 | Symbols: LCR17 | low-molecular-weight cysteine-ri... 128 3e-29
> AT4G11485.1 | Symbols: LCR11 | low-molecular-weight cysteine-rich
11 | chr4:6975282-6975945 REVERSE LENGTH=309
Length=309
Score = 383 bits (207), Expect = 6e-106
Identities = 278/312 (89%), Gaps = 6/312 (2%)
Strand=Plus/Plus
Query 1 ATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTCACCATCCTTGCTATA 60
||||||||| | ||||||||||| | ||||||||||||||||||| | ||||||| |||
Sbjct 1 ATGAAGAAAGCTAGTCAACTATCAACAACCATTCTAACTATCTTCATCGTCCTTGCAATA 60
Query 61 GGGGTGATGGTGGAAGAAACACTGGGAAAACAACGT-TTATGTCTTAAAGTTCTAACAAA 119
||| |||||||| ||| |||| |||||||||||||| || ||| ||||||||||||||||
Sbjct 61 GGGATGATGGTGAAAGGAACAGTGGGAAAACAACGTCTT-TGTATTAAAGTTCTAACAAA 119
Query 120 TGCTTCACATGTATCTAAGGATACATCAACATGTGACTCGAAATTGTGTACTTCTCTATG 179
|||||||||||||||||||| | ||||||||||||| |||||||||||||| ||| ||||
Sbjct 120 TGCTTCACATGTATCTAAGGGTGCATCAACATGTGATTCGAAATTGTGTACCTCTTTATG 179
Query 180 TGAAAAGAAATCTCCCCAAGGGGTTGGTTTTTGCAAGCCTATTGCAACTAC-GGAACAAT 238
|||||||| |||||| ||||| ||| ||||||||||||||||||||||||| ||| ||||
Sbjct 180 TGAAAAGATATCTCCTCAAGGAGTTAGTTTTTGCAAGCCTATTGCAACTACAGGA-CAAT 238
Query 239 CCAAAAAAGGAAAACCTGAATGTAACTGCAGATACTGGTGTCGATCGGATGGAACCCCGT 298
|||| |||||||| || | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 239 CCAAGAAAGGAAATCCAGTATGTAACTGCAGATATTGGTGTCGATCGGATGGAACCCCG- 297
Query 299 C-CACCAAATAG 309
| ||||| ||||
Sbjct 298 CACACCACATAG 309
> AT4G11760.1 | Symbols: LCR17 | low-molecular-weight cysteine-rich
17 | chr4:7079316-7080445 FORWARD LENGTH=612
Length=612
Score = 128 bits (69), Expect = 3e-29
Identities = 158/197 (80%), Gaps = 21/197 (11%)
Strand=Plus/Plus
Query 1 ATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTCACCATCCTTGCTATA 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 11 ATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTTGTGATCCTTGCTATA 70
Query 61 GGGGTGATGGTGGAAG-AAACACTGGGAAAA-CAACGTTTA-T-GTCTTAAAGTTCTAAC 116
|||||||||||| ||| ||||| ||||| || | || || | || || ||| |||||
Sbjct 71 GGGGTGATGGTG-AAGGAAACATTGGGACAAGCGCCGAGTACTTGTTTTGAAGCTCTAA- 128
Query 117 AA-ATGCTTCACATGTATCTAAGGATACATCAACATGTGACTCGAAATTGTGTACTTCTC 175
|| ||||||| | | | || | ||||| ||||||||| |||||||| | ||||
Sbjct 129 AAGATGCTTC---T--A---AGGG-TGCATCA---TGTGACTCGGAATTGTGTGCCTCTC 176
Query 176 TATGTGAA-AAGAAATC 191
||||| || ||||||||
Sbjct 177 TATGT-AAGAAGAAATC 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14326308465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5