BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327303
Length=2931
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11670.1 | Symbols: | Protein of unknown function (DUF810) ... 1857 0.0
AT4G11660.1 | Symbols: AT-HSFB2B, HSFB2B | winged-helix DNA-bin... 270 5e-71
> AT4G11670.1 | Symbols: | Protein of unknown function (DUF810)
| chr4:7044244-7053091 REVERSE LENGTH=3631
Length=3631
Score = 1857 bits (1005), Expect = 0.0
Identities = 1114/1166 (96%), Gaps = 9/1166 (1%)
Strand=Plus/Plus
Query 1 ATGAATTCTATGTTGCAGCGTTACCGGAACGATCGCCGCAAGCTCATGGAGTTTCTTATG 60
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGGATTCTCTGTTGCAGCGTTACCGGAACGATCGCCGCAAGCTCATGGAGTTTCTTATG 180
Query 61 TCTTCGGGTTTGGTAAAGGAGCTTCGTTCCCCTTCTGGTTCTTCTACTTCTCTCTCTCCC 120
||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||
Sbjct 181 TCTTCGGGTTTGGTAAAAGAGCTTCGTTCCCCTTCTGGTTCCCCTACTTCTCTTTCTCCG 240
Query 121 GCTGATTTGGATGCTCTCAGCGCCGATTATGTTTTGGATTGCGTGAAATCCGGTGGTGTA 180
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 241 GCTGATTTGGATGCTCTCAGTGCCGATTATGTTTTAGATTGCGTGAAATCCGGTGGTGTA 300
Query 181 GTTGATGTATCCAAGGGCATAGAGAAATACAATTTTGAGTCATCATACCCTGTAACTATA 240
||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||
Sbjct 301 GTTGATGTATCCAAGGGCAGAGAGAAATACAATTTTGATTCATCATACCCTGTAACAATA 360
Query 241 CACTCTGAGTCTAGAGATTCCTTTTTTCTTGTATCGAGTCCAGATATAGCAGGTTCTCCT 300
|||||||||||| ||||||||| ||||||||| |||||||| ||| ||||||||||||||
Sbjct 361 CACTCTGAGTCTGGAGATTCCTATTTTCTTGTGTCGAGTCCGGATTTAGCAGGTTCTCCT 420
Query 301 CCTCATCGTATGCCTCCTCCTCCAGTTAACATGGAAAAATCCAGTAACAATGACCCAGAC 360
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 421 CCTCATCGTATGCCTCCTCCTCCAGTTAACATTGAAAAATCCAGTAACAATGGTGCAGAC 480
Query 361 ATGTCATGCCACATAGATTCTTCTAGTACTCCTTCATCCAGAGACAACTATGTATTTAAA 420
||||| | ||||| |||||||||| |||||||||| | |||||||||||||||||||||
Sbjct 481 ATGTCGCGTCACATGGATTCTTCTAATACTCCTTCAGCTAGAGACAACTATGTATTTAAA 540
Query 421 GAGGAAACACCTGACATCAAACCCGTGAAACCTATCAAAATCATTCCTCTTGGCTTGCCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAGGAAACACCTGACATCAAACCCGTGAAACCTATCAAAATCATTCCTCTTGGCTTGCCA 600
Query 481 CCCTTGAGAACAGGGTTATCGGATGATGATTTACGAGAAGCAGCATATGAATTACTGATT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 CCCTTGAGAACAGGGTTATCGGATGATGATTTACGAGAAGCAGCATATGAATTAATGATT 660
Query 541 GCTTCTATGTTGCTTTCAAGTTTCTTACGGGTTTTTACAAACAGTGTTGAGGCGTATCCT 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 GCTTCTATGTTGCTTTCAAGTTTCTTA---------ACAAACAGTGTTGAGGCGTATCCT 711
Query 601 ACTCagagaagaaaaatagaaaaaagctcaagactaatgttaagtttgaaaagaaaagat 660
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 712 ACTCATAGAAGAAAGATAGAAAAAAGCTCTAGACTAATGTTAAGTTTGAAAAGAAAAGAT 771
Query 661 aaaCCACATCTACAGCCTCAGATCTCTAATACACACTCAGAGATTTCATCAAAGATGGAT 720
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AAACCACATCTGCAGCCTCAGATCTCTAATACACACTCAGAGATTTCATCAAAGATGGAT 831
Query 721 ACATGCATACGGAGAAATCTGGTACAGTTGGCTACATTAAGGACAGGTGAACAAATTGAT 780
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 832 ACATGCATACGGAGAAATCTGGTACAGTTGGCAACATTAAGGACAGGTGAACAAATTGAT 891
Query 781 CTTCCACAGTTAGCATTGGGGCTTTTGGTTGGAATATTCAAATCAGATTTTCCTAATGAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CTTCCACAGTTAGCATTGGGGCTTTTGGTTGGAATATTCAAATCAGATTTTCCTAATGAA 951
Query 841 AAACTCTACATGAAGTGGAAGACTAGACAGGCTAACCTACTTGAAGAAGTCCTCTGTTTC 900
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 952 AAGCTCTACATGAAGTGGAAGACTAGACAGGCTAACCTACTAGAAGAAGTCCTCTGTTTC 1011
Query 901 TCACCTAGTCTGGAGAAAAATGAACGAGCAACTATGAGAAAATGCCTTGCAACGATTAGA 960
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1012 TCACCTAGTCTGGAGAAAAACGAACGAGCAACTATGAGAAAATGCCTTGCAACGATTAGA 1071
Query 961 GACTCAAAGGAATGGGATGTTGTAGTGTCTGCTTCGCTACGGATTGAGGTTCTATCGTCT 1020
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1072 GACTCAAAGGAATGGGATGTTGTAGTATCTGCTTCACTACGTATTGAGGTTCTATCGTCT 1131
Query 1021 ATAAAGCAGGTGGCTTCAAAGTTGTCATCACTACCAGGCCGTTGTGGTATTGAAGAAGAA 1080
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1132 ATAAGGCAGGTGGCTTCAAAGTTGTCATCACTACCAGGCCGATGTGGTATTGAAGAAGAA 1191
Query 1081 ACTTATTACTGGACTGCTATCTACCATTTGAACATTAGACTCTATGAGAAATTATTATTT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1192 ACTTATTACTGGACTGCTATCTACCATTTGAACATTAGACTCTATGAGAAACTATTATTT 1251
Query 1141 GGTGTATTTGATACTCTTGATGAGGG 1166
||||||||||||||||||||||||||
Sbjct 1252 GGTGTATTTGATACTCTTGATGAGGG 1277
Score = 1013 bits (548), Expect = 0.0
Identities = 594/617 (96%), Gaps = 0/617 (0%)
Strand=Plus/Plus
Query 2315 AGAAATGCAATGCACAGGTCCTTGATACTGTATGCAGTTTGAGTTATGAGGACTCACGGG 2374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2858 AGAAATGCAATGCACAGGTCCTTGATACTGTATGCAGTTTGAGTTATGAGGACTCACGGG 2917
Query 2375 ATATGGTGGTTTTAAGCATCTGCCGATCCACTCTGGAAGCTTATGTTCGAGTGCTACTTG 2434
|||||||||| |||||||||||||||||| |||||||||| ||||||||||| |||||||
Sbjct 2918 ATATGGTGGTGTTAAGCATCTGCCGATCCGCTCTGGAAGCCTATGTTCGAGTACTACTTG 2977
Query 2435 ATGGAGGGCCAACCCGTGCATTTTCGGATTCAGACATCACCTTGATGGAAGAGGATCTCG 2494
||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct 2978 ATGGAGGGCCAACCCGTGCCTTTTCGGATTCTGACATCACCTTGATGGAAGAAGATCTCA 3037
Query 2495 GTATTTTGAAAGAATTCTTCATTGCCGATGGAGAGGGTCTTCCTCGTTCACTAGTTGAGC 2554
||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 3038 GTATTTTGAAAGAGTTCTTCATTGCCGATGGGGAGGGACTTCCTCGTTCACTAGTTGAGC 3097
Query 2555 AAGAAGCAAAACAGGCGAAAGAGATCCTTGACTTGTTCTCTCTCGAGAGCGATATGCTTA 2614
||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |
Sbjct 3098 AAGAAGCGAAACAGGCGAAAGAGATCCTCGACTTGTACTCTCTCGAGAGCGATATGCTAA 3157
Query 2615 TTCAGATGCTAATGACTGCGAGCGAGCTCATCAACATGGGAGTGAGTTCAGAGCAGCGGC 2674
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 3158 TTCAGATGCTAATGACTGCGAGCGAGCTCATCAACATGGGGGTGAGTTCAGAGCAGCGGC 3217
Query 2675 GCTTGGAGGATGCACAAACTCTTGTTAGAGTTCTTTGCCACAAGAAAGACCGTAACGCCT 2734
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3218 GCTTGGAGGATGCACAAACTCTTGTTAGAGTTCTTTGCCACAAGAAAGATCGTAACGCCT 3277
Query 2735 CCAAGTTCTTAAAGCGCCAGTACGAGCTTCCTATGTCATCAGAGTATGAAGATGTAACAT 2794
|||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 3278 CCAAATTCTTAAAGCGCCAGTACGAGCTTCCTATGTCAACAGAATATGAAGATGTAACAT 3337
Query 2795 CGAATCTGCCTGCTTTATCCGAAATCGTGAGAAGCACATCCACCCACTGGAGCACAACAA 2854
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 3338 TGAATCTGCCTGCTTTATCCGAAATCGTGAGAAGCACATCCACTCACTGGAGCACAGCAA 3397
Query 2855 GCCAGAATAGTTTCAGTTCCATCAAGAAGAAGATTCAGGAGGCAACATCTGAAATCAGGA 2914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3398 GCCAGAATAGTTTCAGTTCCATCAAGAAGAAGATTCAGGAGGCAACATCTGAAATCAGGA 3457
Query 2915 ACAACTCAGGATGGTAG 2931
|||||||||||||||||
Sbjct 3458 ACAACTCAGGATGGTAG 3474
Score = 1007 bits (545), Expect = 0.0
Identities = 571/584 (98%), Gaps = 0/584 (0%)
Strand=Plus/Plus
Query 1716 GGAGTGGGAGCCTCTATCAGTTCAGCAAAGACATGCTGCATCAATCGTTGAAATATTCAG 1775
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2223 GGAGTGGGAGCCTCTATCAGTTCAACAAAGACATGCTGCATCAATCGTTGAAATATTCAG 2282
Query 1776 GATCATAGAAGAGACTGTGTCTCAGTTATTTGGTTTGCATCTACCTGTTGATATCACACA 1835
||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||
Sbjct 2283 GATCATAGAAGAGACTGTGTCTCAGCTGTTTGGTTTACATCTACCTGTTGATATCACACA 2342
Query 1836 TCTCCAAGCTCTTCTCTCATTAATTTACCATAGCTTGGATACTTATCTTCAGAGAGTTTT 1895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2343 TCTCCAAGCTCTTCTCTCATTAATTTACCATAGCTTGGATACTTATCTTCAGAGAGTTTT 2402
Query 1896 CGATCAACTAGTTGACAAGAAGTTTCTGTATCCGTCAGCTCCTCCTTTAACTCGATTCAC 1955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2403 CGATCAACTAGTTGACAAGAAGTTTCTGTATCCGTCAGCTCCTCCTTTAACTCGATTCAC 2462
Query 1956 AGAAAATGTAATGCCAGTAATGAAGAGGAAGTCGCTCGAGTTTAGTGAGCCAGATAATAA 2015
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2463 AGAAAATGTAATGCCAGTAATGAAGAGGAAGTCACTCGAGTTTAGTGAGCCAGATAATAA 2522
Query 2016 AATAGTTAAGAAATTGGATGAACTGACAATACCGAAACTCTGCATAATATTGAATACACT 2075
||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 2523 AATAGTTAAGAAACTGGATGAACTGACGATACCAAAACTCTGCATAATATTGAATACACT 2582
Query 2076 CTGTTATATCCAGAAACAAATCAGTGCAACAGAAGTAGGCATAAGGAAATCTTTGACACT 2135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2583 CTGTTATATCCAGAAACAAATCAGTGCAACAGAAGTAGGCATAAGGAAATCTTTGACACT 2642
Query 2136 TGTTGAAGCCTCTCTCAACAAGAGATCTGAAATCGAGACTGATGAATCTGAAGTGGAGAA 2195
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 2643 TGTTGAAGCCTCTCTCAACAAGAGATCAGAAATCGAGACTGATGAAGCTGAAGTGGAGAA 2702
Query 2196 TTCTTTGACGCATAGTGAAGCTGTTGATGAGCTCTTTGCTACCACCTATGACAGCCTCAG 2255
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2703 TTCACTGACGCATAGTGAAGCTGTTGATGAACTCTTTGCTACCACCTATGACAGCCTCAG 2762
Query 2256 GGACACCAATGCCAATTGCATAACCAAAACCCGTGACCTAATTG 2299
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2763 GGACACCAATGCCAATTGCATAACCAAAACCCGTGACCTAATTG 2806
Score = 915 bits (495), Expect = 0.0
Identities = 533/552 (97%), Gaps = 0/552 (0%)
Strand=Plus/Plus
Query 1165 GGGAGCGCAATTCAGGAGTTGCAGAAAGTTACTTCCGCTGAAAGTGGCAACTCAAAGGAA 1224
|||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||
Sbjct 1423 GGGAGCACAATTCAGGAGTTGCAGAAAGTTACTTCTGCTGAAAGTGGCAACCCGAAGGAA 1482
Query 1225 GATCTTTATTTAAGTCATCTAGTATGTTCAAGGCAAACCATTGGAACTGACATACACTTA 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 GATCTTTATTTAAGTCATCTAGTATGTTCAAGGCAAACCATTGGAACTGACATACACTTA 1542
Query 1285 GGTCTCGTGAAGTCTATTTTCACTTCAGTTAGTGCTTGGTGTGATGATAAACTTCAGGAC 1344
||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1543 GGTCTTGTGAAGGCTATTTTAACTTCAGTTAGTGCTTGGTGTGATGATAAACTTCAGGAC 1602
Query 1345 TACCATCTACACTTTGGTAAGAAACCTCGTGATTTTGGAATGCTTGTCAAATTGGCATCA 1404
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1603 TATCATCTACACTTTGGTAAGAAACCTCGTGATTTTGGAATGCTTGTCAGATTGGCATCA 1662
Query 1405 ACAATTGGACTTCCTCCAGCTGACAGTACCAGAACTGAGCTTATCAAGCTGGATACCTTG 1464
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1663 ACAGTTGGACTTCCTCCAGCTGACTGTACCAGAACTGAGCTTATCAAGCTGGATACCTTG 1722
Query 1465 GGTGATGATGTTAGTGATAAGATACAATCCTATGTTCAGAACTCTATCAAAGGTGCATGT 1524
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 AGTGATGATGTTAGTGATAAGATACAATCCTATGTTCAGAACTCTATCAAAGGTGCATGT 1782
Query 1525 GCCAGGGCTGCACATTTTGCTTACGTGAAATCTCATGGTGAGCGTACGCATGCTCTAGCT 1584
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1783 GCCAGGGCTGCGCATTTTGCTTACGTGAAATCTCATGGTGAGCGTACGCATGCTCTAGCT 1842
Query 1585 CTGCTTGCAAATGAACTGAGCGTCATCGCAAAAGCAGAAATCAATGAGTTTGTCCCAGTA 1644
||||||||||||||||| | |||||||||||||| ||| ||||| ||||||||||||||
Sbjct 1843 CTGCTTGCAAATGAACTAACCGTCATCGCAAAAGTAGAGATCAACGAGTTTGTCCCAGTT 1902
Query 1645 TTCTCCAAATGGTTACCCGAATGTATGATGATCTCGGCCATGCTGCTACATCGGTTTTAT 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1903 TTCTCCAAATGGTTACCCGAATGTATGATGATCTCGGCCATGCTGCTACATCGGTTTTAT 1962
Query 1705 GGAGAAAGACTG 1716
||||||||||||
Sbjct 1963 GGAGAAAGACTG 1974
> AT4G11660.1 | Symbols: AT-HSFB2B, HSFB2B | winged-helix DNA-binding
transcription factor family protein | chr4:7042630-7044708
FORWARD LENGTH=1991
Length=1991
Score = 270 bits (146), Expect = 5e-71
Identities = 154/158 (97%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 2774 CAGAGTATGAAGATGTAACATCGAATCTGCCTGCTTTATCCGAAATCGTGAGAAGCACAT 2833
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1841 CAGAATATGAAGATGTAACATTGAATCTGCCTGCTTTATCCGAAATCGTGAGAAGCACAT 1782
Query 2834 CCACCCACTGGAGCACAACAAGCCAGAATAGTTTCAGTTCCATCAAGAAGAAGATTCAGG 2893
|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1781 CCACTCACTGGAGCACAGCAAGCCAGAATAGTTTCAGTTCCATCAAGAAGAAGATTCAGG 1722
Query 2894 AGGCAACATCTGAAATCAGGAACAACTCAGGATGGTAG 2931
||||||||||||||||||||||||||||||||||||||
Sbjct 1721 AGGCAACATCTGAAATCAGGAACAACTCAGGATGGTAG 1684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 145684802472
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5