BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327304
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11680.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)... 1622 0.0
> AT4G11680.1 | Symbols: | Zinc finger, C3HC4 type (RING finger)
family protein | chr4:7053443-7055622 REVERSE LENGTH=1573
Length=1573
Score = 1622 bits (878), Expect = 0.0
Identities = 968/1010 (96%), Gaps = 11/1010 (1%)
Strand=Plus/Plus
Query 7 TCATCATCACCGACGACGAACACAACAACAGAATCAGATTCATCATCTCTACCTACTCAC 66
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TCATCATCAACGACGACGAACACAACAACAGAATCAGATTCATCATCTCTACCTACTCAC 175
Query 67 ATCGGCAGATCAAATTCCGACGGAATCATCGACACTACACCATTTCTTCCTCCCATCGTT 126
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 176 ATCGGTAGATCAAATTCCGACGGAATCATCGACACTACACCATTTCTTCCTCCCACCGTT 235
Query 127 ACAAGAACCATAAGCGTAGATGAAGAATCCAATCCGATTCATCGATCCGCTAGACGACAA 186
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 236 ACAAGAACCATAAGCGTAGATGAAGAATCCAATCCAATTCATCGATCCGCTAGACGACAA 295
Query 187 GGTCTAAGAGAAGCAGCGAGGTTCCTCCGTCACGCTGGTAGCCGGAGGATGATGCGTGAA 246
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 296 GGTCTAAGAGAAGCAGCGAGGTTCCTCCGTCACGCTGGTAGCCGGAGAATGATGCGTGAA 355
Query 247 CCATCGATGCTCGTTAGAGAAACCGCTGCTGAGCAATTGGAAGAGAGACAAAGTGATTGG 306
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 356 CCATCGATGCTCGTTAGAGAAACCGCTGCTGAGCAATTAGAAGAGAGACAAAGTGATTGG 415
Query 307 GCGTATTCTAAACCTGTGGTGTTTCTTGACATTTTGTGGAATCTAGCTTTTGTTGCGATC 366
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 416 GCGTATTCTAAACCTGTGGTGTTTCTTGACATTTTGTGGAATCTTGCTTTTGTTGCCATC 475
Query 367 GGTGTTGCTGTTTTGATTCTTAGCCGTGACGAGAAGCCTAATATGCCGCTGAGAGTTTGG 426
|||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 476 GGTGTTGCTGTTCTGATACTTAGCCGTGACGAGAAGCCTAATATGCCGTTGAGAGTTTGG 535
Query 427 GTTGTTGGTTATGGGATTCAGTGTTGGTTACATATGGCTTGTGTTTGTGTTGAGTATAGG 486
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 536 GTTGTTGGTTATGGGATTCAATGTTGGTTACATATGGCTTGTGTTTGTGTTGAGTATAGG 595
Query 487 CGGAGGAGACGACGACGTCACCGATCTTCGTCGGAGGATGGTGGTGGTCCTGGGTTTACG 546
|||||||||||||||||||||| | | | |||||||||||||| ||||||| |||
Sbjct 596 CGGAGGAGACGACGACGTCACC---C---G--G-AGGATGGTGGTGGTTCTGGGTTGACG 646
Query 547 AATTCGTCG-CAGCAGCAATATGTTTCGTTAGCGCAATTGGAGGACAGAGGAGAGACTAG 605
||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 647 AATTCTTCGTC-GCAGCAATATGTTTCGTTAGCGCAATTGGAGGATAGAGGAGAGACTAG 705
Query 606 TAATCCCGCGAAGCATCTAGAATCAGCCAATACGATGTTCTCATTCATCTGGTGGATAAT 665
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TAATCCTGCGAAGCATCTTGAATCAGCCAATACGATGTTCTCATTCATCTGGTGGATAAT 765
Query 666 TGGATTCTATTGGGTATCTGCAGGAGGCCAAACACTATCTGGTGACTCTCCTCAGCTCTA 725
||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 766 TGGATTCTACTGGGTTTCTGCAGGAGGCCAAACACTATCTAGTGACTCTCCTCAGCTCTA 825
Query 726 TTGGCTGTGTATCATTTTTCTCGGTTTCGATGTTTTCTTTGTTGTTTTCTGTGTTGCACT 785
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 826 TTGGCTGTGTATCATTTTTCTCGGTTTCGATGTTTTCTTTGTTGTGTTCTGTGTTGCATT 885
Query 786 GGCTTGTGTTATCGGCCTTGCTGTTTGCTGTTGTCTTCCATGTATAATTGCAATACTATA 845
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 886 GGCTTGTGTTATCGGCCTTGCTGTTTGCTGTTGTCTTCCATGTATAATTGCAATTCTATA 945
Query 846 TGCTGTTGCCGACCAGGAGGGAGCATCGAAGAACGACATAGATCAAATGCCGAAATTCAA 905
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 TGCTGTTGCCGACCAGGAGGGAGCATCGAAGAACGACATAGATCAAATGCCGAAATTCAG 1005
Query 906 ATTTACAAAAACTGGCAATGATGAAAAGCTCTCTGGCAAAGCACGGGGAATAATGACAGA 965
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||
Sbjct 1006 ATTTACAAAAACTGGCAATGTTGAAAAGCTCTCAGGCAAAGCACGGGGAATAATGACGGA 1065
Query 966 ATGTGGAACAGATTCACCTATTGAACGCTCACTTTCTCCCGAAGACGCGG 1015
|||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct 1066 ATGTGGAACAGATTCACCTATTGAACGCTCGCTCTCTCCAGAAGACGCGG 1115
Score = 231 bits (125), Expect = 9e-60
Identities = 153/166 (92%), Gaps = 3/166 (2%)
Strand=Plus/Plus
Query 1101 GGAATGCTGCATTTGTCTCTGTGAATATGAAGATGGAGTCGAACTAAGAGAACTCCCTTG 1160
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1114 GGAATGCTGCATCTGTCTCTGTGAATATGAAGATGGAGTTGAACTTAGAGAACTCCCTTG 1173
Query 1161 TAACCATCACTTTCATTGCGCTTGCATCGATAAATGGCTTCACATAAACTCTCGATGCCC 1220
||||||||||||||||||| |||||||||||||||||||||| |||||||| || |||||
Sbjct 1174 TAACCATCACTTTCATTGCACTTGCATCGATAAATGGCTTCATATAAACTCACGTTGCCC 1233
Query 1221 ACTTTGCAAGTTTAACATCCTGAAGAACGCAAAC---GAAGTCTAG 1263
|| ||||||||||||||| |||||||||||||| |||||||||
Sbjct 1234 GCTCTGCAAGTTTAACATCTTGAAGAACGCAAACAACGAAGTCTAG 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5