BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327309
Length=1041
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57350.1 | Symbols: AHA3, ATAHA3, HA3 | H(+)-ATPase 3 | chr5... 1175 0.0
AT4G11730.1 | Symbols: | Cation transporter/ E1-E2 ATPase fami... 527 9e-149
> AT5G57350.1 | Symbols: AHA3, ATAHA3, HA3 | H(+)-ATPase 3 | chr5:23230879-23236572
REVERSE LENGTH=3226
Length=3226
Score = 1175 bits (636), Expect = 0.0
Identities = 878/993 (88%), Gaps = 24/993 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGGTATGGATGTTCTGTGCAGCGATAAAACCGGGACTCTCACTCTAAACAAGCTT 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1008 ATGGCTGGTATGGATGTTCTGTGCAGCGATAAAACCGGGACTCTCACGCTAAACAAGCTT 1067
Query 61 AGTGTTGACAAGAATCTGATTGAGGTTTA-TGCTAAAGACTTTGAGAAAGAACAACTTTT 119
||||||||||||||||| ||||||||||| || ||||| | |||||||||| || ||||
Sbjct 1068 AGTGTTGACAAGAATCTTATTGAGGTTTATTG-TAAAGGCGTTGAGAAAGATGAAGTTTT 1126
Query 120 GCTTTTAGCTGCGAGAGCTTCAAGAACAGAGAATCAAGATGCTATTGATACTGCTATGGT 179
|||||| ||||| |||||||||||| ||||| ||||||||||||||| ||||||||||
Sbjct 1127 GCTTTTTGCTGCTAGAGCTTCAAGAGTTGAGAACCAAGATGCTATTGATGCTGCTATGGT 1186
Query 180 TGG-ATCTCTTGCTGATCCAAAAGAGGCAAGAGCTGGAATTAGAGAAG-TGCACTTCCTT 237
||| || || ||||||||||||||||||||||||||||| |||| || | ||||||||
Sbjct 1187 TGGAAT-GCTCGCTGATCCAAAAGAGGCAAGAGCTGGAATCAGAG-AGATTCACTTCCTA 1244
Query 238 CCATTCAATCCAGTTGATAAGCGAACCGCTTTAAC-TTATATCGATGGCAACGGAAACTG 296
|||||||||||||||||||||||||||||||| || || |||||| |||||||||||||
Sbjct 1245 CCATTCAATCCAGTTGATAAGCGAACCGCTTTGACGTT-TATCGACAGCAACGGAAACTG 1303
Query 297 GCACCGAGTAAGCAAAGGAGCTCCCGAGCAGATTCTTGATCTTTGCAACGCAAGAGCTGA 356
|||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 1304 GCACCGAGTAAGCAAAGGAGCTCCCGAGCAGATTCTTGATCTCTGTAACGCGAGAGCTGA 1363
Query 357 TCTGAGGAATAGTGTCCACTCTGCAATCGATAAGTACGCTGAGCGTGGACTCAGGTCATT 416
||||||||| || ||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1364 TCTGAGGAAGAGAGTCCACTCTACAATCGATAAGTACGCTGAGCGTGGACTTAGGTCATT 1423
Query 417 AGCTGTTGCAAGACAGACTGTACCTGAGAAAACAAAAGAAAGCTCTGGT-GATCCATGGG 475
||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||
Sbjct 1424 AGCTGTTTCAAGACAGACTGTACCAGAGAAAACAAAAGAAAGCTCTGGTAG-TCCATGGG 1482
Query 476 AATTTGTTGGTGTGTTGCCTTTATTTGATCCTCCAAGACATGATAGTGCAGAAACCATTA 535
|||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||
Sbjct 1483 AATTTGTTGGTGTGTTGCCTCTGTTTGATCCTCCAAGACATGATAGTGCCGAAACCATTA 1542
Query 536 AAAGAGCTTTAGACCTCGGTGTCAACGTGAAGATGATTACCGATGATCAACTTGCTATTG 595
||||||| |||||||||||||||| || ||||||||||| | |||||||||||||||||
Sbjct 1543 GAAGAGCTCTAGACCTCGGTGTCAATGTCAAGATGATTACTGGTGATCAACTTGCTATTG 1602
Query 596 CAAAAGAAACTGGACGTAGACTTGGTATGGGAACAAATATGTACCCAATCA-CATCATTA 654
| ||||| || |||||||||||||| |||||| |||| ||||||||| || | || |||
Sbjct 1603 CGAAAGAGACAGGACGTAGACTTGGAATGGGATCAAACATGTACCCA-TCCTCTTCTTTA 1661
Query 655 CTCGGTAACCACAAAGACGATATC-ATCACTCACCAT-CCTGTTGATGAGTCGATTGCGA 712
|||||||| ||||||||||| | | || ||||| || |||||||| || | ||||| ||
Sbjct 1662 CTCGGTAAACACAAAGACGA-AGCCATGGCTCAC-ATTCCTGTTGAGGATTTGATTGAGA 1719
Query 713 TAGCTGATGGATTTTCCGGAGTCTTCCCAGAGCACAAATACGAAATTGTGAAGAAGTTGC 772
||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1720 AAGCTGATGGCTTTGCTGGAGTCTTCCCAGAGCACAAATACGAAATTGTGAAGAAGTTGC 1779
Query 773 AAGAGATGGG-GCATATTTGTGGTATGATTGGTGATCGAGTGGATGACACTCCTGCATTA 831
|||| | || |||||| |||||||||| ||| ||| ||||| ||||| |||| |||||
Sbjct 1780 AAGAAA-GGAAGCATATCTGTGGTATGACTGGAGATGGAGTGAATGACGCTCCAGCATTG 1838
Query 832 AAGAAAGCGGATATTGGTATCGCTTTTGCGGATGCTACTGAAGCTGTAAGAGCTGCTTCT 891
|||||||||||||| ||||||||| | |||||||| ||||| |||| | ||| |||||||
Sbjct 1839 AAGAAAGCGGATATAGGTATCGCTGTGGCGGATGCAACTGACGCTGCACGAGGTGCTTCT 1898
Query 892 GATATCGTTCTGACTGAGCCTGGACTCAGTGTTATCATCAACGCGGTTCTAACTAGTCGA 951
||||| || || || ||||| || |||||||| ||||||| |||||||||||| ||| ||
Sbjct 1899 GATATTGTCCTCACCGAGCCAGGTCTCAGTGTGATCATCAGCGCGGTTCTAACCAGTAGA 1958
Query 952 GCCA-CTTTGCA-ACAAATGAA-ATACTACACA 981
|||| ||| || | || |||| | ||||||||
Sbjct 1959 GCCATCTTC-CAGAGAA-TGAAGA-ACTACACA 1988
> AT4G11730.1 | Symbols: | Cation transporter/ E1-E2 ATPase family
protein | chr4:7067035-7070968 FORWARD LENGTH=2442
Length=2442
Score = 527 bits (285), Expect = 9e-149
Identities = 375/417 (90%), Gaps = 11/417 (3%)
Strand=Plus/Plus
Query 1 ATGGCTGGTATGGATGTTCTGTGCAGCGATAAAACCGGGACTCTCACTCTAAACAAGCTT 60
||||| | ||| |||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 964 ATGGCCGCTATTGATGTTCTGTGCAGTGATAAAACCGGGACTCTAACTCTCAACAAGCTT 1023
Query 61 AGTGTTGACAAGAATCTGATTGAGGTTTATGCTAAAGACTTTGAGAAAGAACAACTTTTG 120
||||||||||||||||||||| |||||||| |||||||| |||||||||||||| | |||
Sbjct 1024 AGTGTTGACAAGAATCTGATTAAGGTTTATTCTAAAGACGTTGAGAAAGAACAAGTGTTG 1083
Query 121 CTTTTAGCTGCGAGAGCTTCAAGAACAGAGAATCAAGATGCTATTGATACTGCTATGGTT 180
|| |||||||| |||||||| |||| |||||||| ||||| ||||||| |||||||||||
Sbjct 1084 CTATTAGCTGCAAGAGCTTCGAGAATAGAGAATCGAGATGGTATTGATGCTGCTATGGTT 1143
Query 181 GGATCTCTTGCTGATCCAAAAGAGGCAAGAGCTGGAATTAGAGAAGTGCACTTCCTTCCA 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1144 GGATCTCTTGCTGATCCAAAAGAGGCAAGAGCTGGAATTAGAGAAGTTCACTTCA----A 1199
Query 241 TTCAATCCAGTTGATAAGCGAACCGCTTTAACTTATATCGATGGCAACGGAAACTGGCAC 300
| | | ||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1200 T-C--T--AGTTGATAAACGAACCGCTTTAACTTATATCGATGGCAACGGAGACTGGCAT 1254
Query 301 CGAGTAAGCAAAGGAGCTCCCGAGCAGATTCTTGATCTTTGCAACGCAAGAGCTGATCTG 360
||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||||||
Sbjct 1255 CGAGTAAGCAAAGGAACTCCAGAGCAGATTCTTGATCTTTGCAACGCGAGAGATGATCTG 1314
Query 361 AGGAATAGTGTCCACTCTGCAATC-GATAAGTACGCTGAGCGTGGACTCAGGTCATT 416
||||| ||||||||||| |||||| || || ||||||||||||||||||| ||||||
Sbjct 1315 AGGAAGAGTGTCCACTCGGCAATCAGA-AATTACGCTGAGCGTGGACTCAAGTCATT 1370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51037893352
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5