BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327322
Length=786
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11940.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 701 0.0
> AT4G11940.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G11930.1);
Has 37 Blast hits to 37 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:7168173-7168967
FORWARD LENGTH=795
Length=795
Score = 701 bits (379), Expect = 0.0
Identities = 687/824 (83%), Gaps = 67/824 (8%)
Strand=Plus/Plus
Query 1 ATGTATTCTGGAGAAGGTGCTTCACAAACCCGCACAGCCCCCGAAGATAAACCAATCCAA 60
|||| ||| ||||| ||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 1 ATGTTTTCCGGAGAGGGTGCTTCACAAATCCGCATAGCTCCCGAAGATAAACCAATCCAA 60
Query 61 AGGTGCCACCAACTTCTAAAGTTGCGTGACTTTAAGAGCGCTCGATATATCATTCAAATG 120
||||| ||||| ||||||||| ||||||||| ||||||||||||||||||| |||||||
Sbjct 61 TGGTGCTACCAAATTCTAAAGTCGCGTGACTTCAAGAGCGCTCGATATATCACTCAAATG 120
Query 121 AATAAGCGAG-TAAGCAAGAAACGTCATGATGAGCT-TGAGAAAGCCCTAGTCATTTGTG 178
||| | || ||||||||| ||||||||||||| | |||||||| ||||| ||||||||
Sbjct 121 AATTTG-AAGTTAAGCAAGACACGTCATGATGAG-TATGAGAAAGGCCTAGCCATTTGTG 178
Query 179 ACATCCTTATCGCTGCAGAGAACCGTCTTCCCCACGGGTTGTTGGATTGTTACGGCATGA 238
||||||| ||||| ||||||||||| |||||| |||||||||||||||| ||||||||||
Sbjct 179 ACATCCTGATCGCCGCAGAGAACCGGCTTCCCAACGGGTTGTTGGATTGCTACGGCATGA 238
Query 239 TCCGGATGACCGGACCTGGACCCGTTTTATTTGAGAATATCGAGAA-GATATTGAATCTT 297
||||||||||| ||||||||| ||||||| | |||| |||||||| || ||||||||||
Sbjct 239 TCCGGATGACCAGACCTGGACTAGTTTTATATCAGAACATCGAGAAGGA-ATTGAATCTT 297
Query 298 TTGGGATGGGGAGACACTAGTAACCCTTTCCCATTTAGACATGAAGCTTCTGAAAAAG-C 356
|||||||||||| ||| |||||||||||||||||||||||| |||||||||| |||||
Sbjct 298 TTGGGATGGGGAAACATTAGTAACCCTTTCCCATTTAGACAAGAAGCTTCTG-AAAAGTT 356
Query 357 CTTCTTTGCTTGGTCGCTCCTGTCCAATCCAACCATTAAGTCGATGTACGATTACGCTAT 416
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 357 CTTCTTTGCTTGGTCGCTTCTGTCCAATCCAACCATTAAGGAGATGTACGATTACGCTAC 416
Query 417 CTCGGACGATGAT-AACCTTGAACCCC-----AA-G-----G---A-A---ATGTAG--- 454
|||||| || | | ||||||||||||| || | | | | ||||||
Sbjct 417 CTCGGATGA-GGTAAACCTTGAACCCCAAGGAAATGTCAATGAATACATGGATGTAGACA 475
Query 455 GCAGCAGCCAAATCGGTGATGGATTAGGCGA-TGACATAACCTATGA-GTG-CTTGA-AA 510
|||||||||||| |||| |||||||||| | || | | | ||| || || || |
Sbjct 476 GCAGCAGCCAAAGCGGTTATGGATTAGG-TAGTGTCCTTTGTTCTGATTTGCCTGGATCA 534
Query 511 GAGT--TT--CCG-G-TAGCGGATGTGAATCCCTTGCCGCTGGC-GAGGAAACGACAGGC 563
|||| || | | | ||||||||| |||||||||||||||| || |||| |||||||
Sbjct 535 GAGTACTTGAAAGAGTTTGCGGATGTGTATCCCTTGCCGCTGGCGGA-GAAAGGACAGGC 593
Query 564 TCCGCACAATCGGTTTCGATGGAATGACACTTCCTTTGATCCCAAGAACCATAATGTTGG 623
||||||||||||| || ||| ||| | | | | |||||||||||||
Sbjct 594 TCCGCACAATCGG-TT---TGG-ATG-----------G-T---ATG-ACCATAATGTTGG 632
Query 624 TCCTGGAACTAACAATAAGGTGGTAGTTGTTTATGACGACGCTGAAGAGGAGGAGTATGA 683
||||| |||||||||||| ||||||||| |||||| |||||| |||||||||||| |||
Sbjct 633 TCCTGAAACTAACAATAATGTGGTAGTTACTTATGAGGACGCTAAAGAGGAGGAGTGTGA 692
Query 684 CATGAGCT-TGAGCAGCGAACTGCGCATAATTAATGGAAGGAGAGTGAAAATTACCATTG 742
|||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 CATGAGCTCT-AGTAGCGAACTGCGCATAATTAATGGAAGGAGAGTGAAAATTACCATTG 751
Query 743 AAGAAGCAGCAAAAACAAATGCTACTGCTAGTTGCTCAAGATGA 786
||||||||||| |||||| || |||| |||||||||||||||||
Sbjct 752 AAGAAGCAGCAGAAACAAGTGATACTCCTAGTTGCTCAAGATGA 795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38228185867
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5