BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327335
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12080.1 | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-loc... 1594 0.0
> AT4G12080.1 | Symbols: AHL1, ATAHL1 | AT-hook motif nuclear-localized
protein 1 | chr4:7239219-7241494 FORWARD LENGTH=1566
Length=1566
Score = 1594 bits (863), Expect = 0.0
Identities = 1002/1069 (94%), Gaps = 9/1069 (1%)
Strand=Plus/Plus
Query 1 ATGGTCTTAGATATGGAGTCTACCGGAGAAGTTGTTAAATCAACCGCCAGTAACGGCGGC 60
||||||||| ||||||||||||||||||||| ||||| ||||||| || |||||| |||
Sbjct 248 ATGGTCTTAAATATGGAGTCTACCGGAGAAGCTGTTAGATCAACCACCGGTAACGACGGT 307
Query 61 GGTATTACGGTGGTTAGATCCGACGCGCCGTCAGATTTCCACGTAGCTCAAAGATCAGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 GGTATTACGGTGGTTAGATCCGACGCGCCGTCAGATTTCCACGTAGCTCAAAGATCAGAA 367
Query 121 AGCTCAAACCAATCTCCCGCCTCCGTCACTCCTCCTCCATCACAACCGTCGTCTCATCAC 180
|||||||||||||||||| |||| ||||||||||||||| |||| || ||||||||||||
Sbjct 368 AGCTCAAACCAATCTCCCACCTCTGTCACTCCTCCTCCACCACAGCCATCGTCTCATCAC 427
Query 181 ACAGCTCCTCCGCCGCCGCAAAGTTCGACGG---CGAC---GACTACGACGGCAGCTATG 234
|||||||||||||||| ||||| |||||||| |||| |||||||||||| || |||
Sbjct 428 ACAGCTCCTCCGCCGCTGCAAATTTCGACGGTGACGACTACGACTACGACGGCCGCGATG 487
Query 235 GAAGGTATCTCCGGTGGACTAATCAAGAAGAAGCGTGGACGGCCAAGGAAGTACGGACCG 294
|||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 488 GAAGGTATCTCCGGTGGACTGATGAAGAAGAAGCGTGGACGGCCAAGGAAGTATGGACCG 547
Query 295 GACGGGACTGTTGTAGCGTTATCTCCTAAGCCAATTTCATCAGCGCCGGCGCCGTCGCAT 354
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 548 GACGGGACTGTTGTAGCGTTATCTCCTAAACCGATTTCATCAGCGCCGGCGCCGTCGCAT 607
Query 355 CTTCCGCCGCTGAGTTCACACGTCATCGATTTCTCCGCCTCTGAGAAACGTAGCAAAGTG 414
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 608 CTTCCGCCGCCGAGTTCACACGTCATCGATTTCTCCGCTTCTGAGAAACGTAGCAAAGTG 667
Query 415 AAACCAACAAACACTTTTAACAGAACCAAGTATCATCATCAAGTTGAGAATTTGGGTGAA 474
|||||||| ||| | ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 668 AAACCAACGAACTCGTTTAACAGAACAAAGTATCATCACCAAGTTGAGAATTTGGGTGAA 727
Query 475 TGGGCTCCTTGCTCCGTCGGTGGTAATTTCACACCTCATGTAATCACAGTCAACGCTGGT 534
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 728 TGGGCTCCTTGCTCCGTCGGTGGTAATTTCACACCTCATATAATCACAGTCAACACCGGC 787
Query 535 GAGGATGTAACAATGAAGATAATCTCGTTTTCGCAACAAGGACCTCGTTCTATTTGCGTT 594
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 788 GAGGATGTAACAATGAAGATAATCTCGTTTTCGCAACAAGGACCTCGCTCTATTTGTGTT 847
Query 595 CTATCAGCAAATGGTGTTATTTCAAGCGTTACACTTCGTCAGCCTGATTCCTCTGGCGGT 654
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 848 CTGTCAGCAAACGGTGTTATTTCAAGCGTTACACTTCGTCAGCCAGATTCCTCTGGCGGC 907
Query 655 ACATTGACATACGAAGGTCGGTTTGAGATATTATCATTGTCCGGGTCATTCATGCCTAAT 714
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 908 ACATTGACATACGAAGGTCGGTTTGAGATATTATCATTATCCGGGTCATTCATGCCTAAT 967
Query 715 GATTCAGGCGGAACTCGGAGTAGAACTGGAGGAATGAGCGTATCGTTAGCAAGCCCCGAC 774
|||||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||
Sbjct 968 GATTCAGGCGGAACACGAAGTAGAACGGGAGGAATGAGTGTATCGTTAGCAAGTCCCGAT 1027
Query 775 GGACGTGTAGTAGGCGGTGGCCTTGGCGGTTTACTAGTAGCCGCGAGTCCGGTTCAGGTG 834
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1028 GGACGTGTAGTAGGCGGTGGCCTCGCCGGTTTACTAGTAGCCGCGAGTCCGGTTCAGGTG 1087
Query 835 GTTGTAGGAAGTTTTCTAGCTGGCACTGACCAGCAAGATCAGAAACAGAAAAAGAACAAA 894
||||||||||||||| |||| ||||||||||| ||||||||||||| |||||||||||||
Sbjct 1088 GTTGTAGGAAGTTTTTTAGCGGGCACTGACCATCAAGATCAGAAACCGAAAAAGAACAAA 1147
Query 895 CACGATTTCATGTTGTCCAATCCTACCGCTGCGATTCCTATCTCTAGTGCAGCTGATCAC 954
|| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||||
Sbjct 1148 CATGATTTCATGTTGTCGAGTCCTACCGCTGCAATTCCTATCTCTAGTGCAGCTGATCAC 1207
Query 955 CGGACAATCCATTCGGTCTCGTCTCTTCCGGTCAATAATA---CATGGCAGACTTCTTTA 1011
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1208 CGGACAATCCATTCGGTCTCGTCTCTTCCGGTCAATAATAATACATGGCAGACTTCTTTA 1267
Query 1012 GCTTCTGATCCAAGAAACAAGCATTCCGATATTAATGTCAATTTAACTT 1060
||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1268 GCTTCCGATCCAAGAAACAAGCATACCGATATTAATGTCAATGTAACTT 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5