BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327338
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12100.1 | Symbols: | Cullin family protein | chr4:7246422-... 959 0.0
> AT4G12100.1 | Symbols: | Cullin family protein | chr4:7246422-7248127
REVERSE LENGTH=1336
Length=1336
Score = 959 bits (519), Expect = 0.0
Identities = 629/681 (92%), Gaps = 12/681 (2%)
Strand=Plus/Plus
Query 526 AAGCTTTTCCATAAGCAACTCTCCACGGCCCCTCAACTTCAAGATCAAGTTATTACCGGC 585
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 589 AAGCTTTTCCATAAACAACTCTCCATGGCCCCTCAACTTCAAGATCAAGTTATTACCGGC 648
Query 586 ATATTAGGACTCATCACTGATGAAAGATTAGGCAAGGCTGCTAACAACACTAGTGGTCTC 645
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||| ||||
Sbjct 649 ATATTAAGACTCATCACTGATGAAAGATTAGGCAAGGCTGCGAACAACACGAGTGATCTC 708
Query 646 CTAAAGAATCTTATGGACATGTTCCG--T---G-GGCAGTGGCCAGATGTGTATAAGAAC 699
|||||||||||||||||||||||||| | | ||||||| || ||||||||||| ||
Sbjct 709 CTAAAGAATCTTATGGACATGTTCCGCATGCAGTGGCAGTGTACATATGTGTATAAGGAC 768
Query 700 CCTTTTCTTGATTCCACTTCTAAGTTTTACGCCGAGGAAGCAGAGCTAGTCCTGCAGCGG 759
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 769 CCTTTTCTTGATTCCACTTCTAAGTTTTACGCCGAGGAAGCAGAGCAAGTCCTGCAGCGA 828
Query 760 TCCGACATTTCCCACTACTTGAAATATGTCGAG-----TTTCCTTGCGGAAGAGAAAAAA 814
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 829 TCCGACATTTCCCACTACTTGAAATATGTCGAGAGGACTTTCCTTGCGGAAGAGGAAAAA 888
Query 815 TGCGAGGAGCATTATTACTTCTTTGCATCTTGCCGGTCACGACAAATGAAAGTCTTAGAG 874
||||| ||||||||| ||||||| |||||| |||||| |||| ||||||||||||| ||
Sbjct 889 TGCGATAAGCATTATTTCTTCTTTTCATCTTCCCGGTCTCGACTAATGAAAGTCTTAAAG 948
Query 875 AGTCAGCTCCTCGAGGCTCACGCTTGTTT-CTTGAAGATGGTTTTAAGCTATTAATGGAT 933
||||||||||| ||||| ||| ||| ||| |||||||| ||||||| |||||||||||||
Sbjct 949 AGTCAGCTCCTGGAGGCGCACTCTTCTTTTCTTGAAGAGGGTTTTATGCTATTAATGGAT 1008
Query 934 GAGAGTCTCATGGATGACCTTAGAAGAATGTATCGTTTGTTCTCTAGGGTAGATTCGGTG 993
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1009 GAGAGTCTCATCGATGACCTTAGAAGAATGTATCGTTTGTTCTCTATGGTAGATTCGGAG 1068
Query 994 GATTATATAGACCGCATTCTGAGAGCCTACATTTTGGCAAAGGGAGAGGGAGCGAGGCAA 1053
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1069 GATTATATAGACCGCATTCTGAGAGCCTACATTTTGGCAAAAGGAGAGGGAGCTAGGCAA 1128
Query 1054 GAAGGCTCCTTGCAGGAGTTGCATACTAGCATTGATAAGATATGGCATCAATGCTTTGAT 1113
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1129 GAAGGCTCCTTGCAGGAGTTGCATACTAGCATCGATAAGATATGGCATCAATGCTTTGGT 1188
Query 1114 GTGTATGATTTATTGGATAAGACCATCAGAGACTGTTTTGAGGGTTTTGGTCTTCATGTG 1173
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 CAGGACGATTTGTTGGATAAGACCATCAGAGACTGTTTTGAGGGTTTTGGTCTTCATGTG 1248
Query 1174 CTGGGTGAATTTTCGGATCAA 1194
| |||||||||||||||||||
Sbjct 1249 CCGGGTGAATTTTCGGATCAA 1269
Score = 665 bits (360), Expect = 0.0
Identities = 485/542 (89%), Gaps = 22/542 (4%)
Strand=Plus/Plus
Query 1 ATGAAACGCTCGCTCAGCCCCGACTCTTTATCCTCCGCGAAGTCGCCGAAGCTCTTTCAC 60
|||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||| |||||
Sbjct 1 ATGAAACGCTCGATCAGCCCCGACCCTTTTTCCTCAACGAAGTCGCCGAAACTCGTTCAC 60
Query 61 CACTCACCGGATGATGGAGGAGCAGAGGGCAATTCTTATCGTCTTCCTTATACCTTAAGC 120
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 61 CACTCACCGGATGATGGAGGAGCAGAGGGCAATCCTTATCGTCTTCCTTTTACCTTAAGC 120
Query 121 GATGAAAACCTCTCCTGCCTTCCTATATCCCAGGCGAGGGAGCCTCCTGCTA--TTT-AC 177
|||||||||||||| ||||||||||| ||||||||||||||||||||| ||| ||| ||
Sbjct 121 GATGAAAACCTCTCATGCCTTCCTATCTCCCAGGCGAGGGAGCCTCCTCCTATCTTTAAC 180
Query 178 CTGGATCCC-GCTCTTGTTAAAGTTAGACGAGACAGAAA-AGAAGGATACTTAGCAAAAG 235
|||||||| || ||| |||| || || ||||||||| | || ||||||||||||||
Sbjct 181 TTGGATCCCAATTC-TGTCAAAGATACACAAGACAGAAACA-AACTATACTTAGCAAAAG 238
Query 236 CTTGGGACTTGCTAAAGCCAGCGATCAAAATCATCTTAGATGATGA--A-TACAAGAAGC 292
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 239 CTTGGGACTTGCTAAAGCCAGCGATCAAAATCATCTTAGATGATGATGAATACAAAAAGC 298
Query 293 CTGGCG---TTCTCTGTTTCACTACCATTTTTAGAGCTGTTAAGCGTGCTTACTTTGGCG 349
|||||| |||||||||||||||| ||||||||||||||||||||||||| ||| ||||
Sbjct 299 CTGGCGACGTTCTCTGTTTCACTACGATTTTTAGAGCTGTTAAGCGTGCTTGCTTAGGCG 358
Query 350 ATCCTCCACAAGT-AGAACTGATTTTCGATCTTGTCCAGCATGAGTGTGAGCCACACATT 408
|||||| |||| | ||||||| ||||| |||||||| |||||||||||||||| ||||||
Sbjct 359 ATCCTCGACAA-TCAGAACTGGTTTTCAATCTTGTCAAGCATGAGTGTGAGCCTCACATT 417
Query 409 GCTGAGGTTATACAGTCTTTAGAAAAGCAAA-GCAGTGGCAGTGAT---CCCTCTGTTTT 464
|||||| |||||||||||||||||||| || |||||||||||||| |||||||| ||
Sbjct 418 GCTGAGCTTATACAGTCTTTAGAAAAG-AATTGCAGTGGCAGTGATGATCCCTCTGTGTT 476
Query 465 CTTGCCACTCGTGTACAATTGCTGGCTAGACTTTAAAAGGAAGATGA-TGCTTGTGTCTG 523
|||||||| |||||||||| ||||||||||||||||||||||||||| | ||||||||||
Sbjct 477 CTTGCCACACGTGTACAATCGCTGGCTAGACTTTAAAAGGAAGATGAGT-CTTGTGTCTG 535
Query 524 AC 525
||
Sbjct 536 AC 537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59989651275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5