BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327340
Length=1989
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12120.1 | Symbols: SEC1B, ATSEC1B | Sec1/munc18-like (SM) p... 3241 0.0
> AT4G12120.1 | Symbols: SEC1B, ATSEC1B | Sec1/munc18-like (SM)
proteins superfamily | chr4:7256538-7261180 REVERSE LENGTH=2404
Length=2404
Score = 3241 bits (1755), Expect = 0.0
Identities = 1911/1989 (96%), Gaps = 0/1989 (0%)
Strand=Plus/Plus
Query 1 ATGTCTTTCTCCGATTCTGGATCGTCCTCTAATGGCGGAGATTACAAGAATTTCAGACAA 60
||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 267 ATGTCCTTCTCCGATTCTGGATCGTCCTCTTATGGCGGAGAGTACAAGAATTTCAGACAA 326
Query 61 ATCACTAGAGAAAGATTACTCTATGAAATGCTTAGGCCAGaaaaaaaTGGAAGCTCTAAA 120
||||| |||||||||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 327 ATCACCAGAGAAAGATTACTTTGTGAAATGCTTAGGCCAGAAAGAAATGGAAGCTCTAAA 386
Query 121 TTAACTTGGAAGGTACTTGTTATGGACAAGTTCACAGTGAAGATAATGTCATCTGCTTGC 180
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 387 TTAACTTGGAAGGTACTTGTAATGGACAAGTTCACTGTGAAGATAATGTCATCTGCTTGC 446
Query 181 AAAATGTCTGAGATCACACAAGAAGGCATTTCTTTGGTTGAGGTTATAACTAAGCATAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 447 AAAATGTCTGAGATCACACAAGAAGGCATTTCTTTGGTTGAGGTTATAACTAAACATAGG 506
Query 241 CAACCTATGACTTCCATGGAAGTTATATACTTTATTCAACCGACCGAAGAGAATGTTACT 300
||||||||||| | |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 507 CAACCTATGACAGCAATGGAAGTCATATACTTTATTCAACCGACCGAAGAGAATGTCACT 566
Query 301 GCGTTTTTATCAGATATGACTGGAAAATCACCACTTTACAAGAAGGCTTTTGTTTTCTTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 GCGTTTTTATCAGATATGACTGGAAAATCACCACTTTACAAGAAGGCTTTTGTTTTCTTT 626
Query 361 AGTTCGCCTGTTTCGAGAGGCTTAGTTAATCTCATTAAGAAGGACATGCGAGCGATGAAA 420
||||| |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 627 AGTTCTCCTGTTTCGAGAAGCTTAGTTAATCTCATTAAGAAGGACATGAGAGCAATGAAA 686
Query 421 CGAATTGGGGCATTGAAAGAGATGAATTTGGAGTACATTAGCATGGACATCCAGGGGTAT 480
|||||||||| ||||||||||||||| |||||||| |||||||||||||||||||| | |
Sbjct 687 CGAATTGGGGGATTGAAAGAGATGAACTTGGAGTATATTAGCATGGACATCCAGGGCTTT 746
Query 481 GTTACAAATAATGAAAATGCTTTAGAAGAAATTTTCTGTGATGAGGAAAACCATCAAAGA 540
||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||
Sbjct 747 GTTACAAATAATGAAAATGCTTTAGAAGAGCTTTTCTGTGACGACGAAAACCATCAAAGA 806
Query 541 GCAGATGCTTGCTTGAATGTGGTAGCTAAACGAATTGCTACAGTTTTGGCCTCGCTAAAG 600
|||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 807 GCAGATGCTTGCTTAAATGTGGTAGCTAAAAGAATTGCTACAGTTTTGGCCTCACTAAAG 866
Query 601 GAATACCCCTTTGTTCGCTACCGCGCAGCCAAAGCTCTTGATGCCACAACAATGACAACT 660
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 867 GAATATCCCTTTGTTCGCTACCGCGGAGCCAAAGCTCTTGATGCCACAACAATGACAACT 926
Query 661 TACCGAGAGTTGATTCCTACAAAGCTTGCTGCTAGTGTATGGAATTGTCTGGCAAGATAC 720
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 927 TACCGAGAGTTGATTCCTACAAAGCTTGCTGCTAGTGTATGGAATTGTCTTGCAAGATAC 986
Query 721 AAACAGACAATCGAAGATTTTCCTCAGACTGAAACATGCGAACTACTTATCTTGGATCGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 AAACAGACAATCGAAGATTTTCCTCAGACTGAAACATGCGAACTACTTATCTTGGATCGA 1046
Query 781 TCCATAGACCAGATCGCACCTCTCATTCATGAGTGGACATATGATGCGATGTGTCACGAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1047 TCCATAGACCAGATCGCACCTCTCATTCATGAGTGGACATATGATGCGATGTGCCACGAT 1106
Query 841 TTGCTTAATATGGAAGGAAATAAATACACATACGAGGTTCCGAGTAAAACTGGTGATATA 900
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 1107 TTGCTTAATATGGAAGGAAATAAATACACACACGAGGTTCCGAGTAAAACTGGTGATAAA 1166
Query 901 CCTGAGAAGAAAGAGGTTCTTTTAGATGAAGAAGATCCCATTTGGGTGGAGCTTCGTGAT 960
||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||
Sbjct 1167 CCTGAGAAGAAAGAGGTTCTTCTAGATGAGGAAGATTCCATTTGGGTGGAGCTTCGTGAT 1226
Query 961 GCTCACATTGCAGATGCAAGTGAAAGATTGCATGAAAAGATGACAAACTTTGTGTCGAAG 1020
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1227 GCTCATATTGCAGATGCAAGTGAAAGATTGCATGAAAAGATGACAAACTTCGTGTCGAAG 1286
Query 1021 AACAAAGCTGCGCAATTGAAACACAGCTCAAAAGACTTTGGTGACCTTTCATCAAAAGAC 1080
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1287 AACAAAGCTGCGCAATTGAAACACAGTTCAAAAGACTTTGGTGACCTTTCATCAAAAGAC 1346
Query 1081 TTGCAGAAGATGGTTCACGCTTTGCCTCAGTACAGTGAGCAAATTGACAAGCTTTCTCTA 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 TTGCAGAAGATGGTTCACGCTTTGCCTCAGTACAGTGAGCAAATTGACAAGCTTTCTCTA 1406
Query 1141 CATGTGGAGATTGCTAGAACAATTAACAGAACTATCATGGAACAAGGTCTAAGAGATCTC 1200
||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1407 CATGTTGAGATCGCTAGAACAATAAACAGAACTATCATGGAACAAGGTCTAAGAGATCTC 1466
Query 1201 GGGCAGCTAGAGCAGGACCTTGTATTTGGGGATGCTGGAAGAAAGGACGTTATCAAATTT 1260
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1467 GGGCAGCTCGAGCAGGACCTTGTTTTTGGGGATGCTGGAAGAAAGGACGTTATCAAATTT 1526
Query 1261 CTGAGCACCAACCATATTATAAGCCACGAAAGCAAGCTGAGATTAATGATGATTGTTGCG 1320
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1527 CTGAGCACCAACCATATTATAAGCCACGAAAGCAAGCTGAGGTTAATTATGATTGTTGCT 1586
Query 1321 GCAATATATCCGAAGAAGTTCGAAGGTGAAAAGGGACGAAAGATGATGGAGCTAGCAAAG 1380
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1587 GCAATATATCCGAAGAAGTTCGAAGGTGAAAAGGGACGTAAGATGATGGAGCTAGCAAAA 1646
Query 1381 TTGTCGGGTGATGATGTAGTAGCTGTGAACAATATGAGATTACTTGGACCAGTACATACG 1440
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1647 TTGTCGGGCGATGATGTAGTAGCTGTGAACAATATGAGATTACTTGGACCAGTACATACG 1706
Query 1441 GAGTCCaaaaaaaGCACAACAGGATCTTTCCCTCTCAAGTTTGATGTTCTTAAGAAGAAG 1500
|||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||| ||||
Sbjct 1707 GAGTGCAAAAAGAGCACAACAGGATCTTTTCCTCTCAAGTTTGATGTCCTTAAGACGAAG 1766
Query 1501 CGAGCTGCTCGAAGAGACCGGGTTGGTGAAACTCAAACATGGCAACTGTCTCGTTTTTAT 1560
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1767 CGAGCTGCTCGAAGAGACCGAGTTGGTGAAACTCAAACATGGCAACTGTCTCGTTTTTAC 1826
Query 1561 CCGATCGTCGAGGAACTTGTTGAGAAACTTAGCAAAGGTCATTTGCCAAAGCAAGATTAC 1620
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1827 CCGATTGTTGAGGAACTTGTTGAGAAACTTAGCAAAGGTCATTTGCCAAAACAAGATTAC 1886
Query 1621 CCTTGTATGAATGAACCAAAGCCAACCTTTTATTCTGGCTCTCAATCTCCATCAGCTAGT 1680
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1887 CCTTGTATGAATGAACCAAAGCCAACCTTTTATTCTGGCTCTCTGTCTCCATCAGCGAGT 1946
Query 1681 CCGGTATTGCCTCACTCAAGACGAACACCAACATGGGCAAGACGCCATCTTTCTGATGAT 1740
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1947 CCGGTATTGCCTCATTCAAGACGAACACCAACATGGGCAAGACGCCATCTTTCTGATGAT 2006
Query 1741 GGATATTTCAGTGACTCGGTTCTAGGACGAGCATCTAGCGGATTCAAGAGAAAGGGCCAG 1800
|||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 2007 GGATATTTCAGTGACTCGGTTCTAGGACGAGCATCTAGTGGGTTCAAGAGAAAGGGACAG 2066
Query 1801 CGGATTTTTGTGTTCATAGTAGGAGGAGCAACGAGATCAGAGTTAAGAGTTTGCCACAAA 1860
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2067 CGGATTTTCGTGTTCATAGTAGGAGGAGCAACGAGATCAGAGTTAAGGGTTTGCCACAAA 2126
Query 1861 CTTACGGAGAAGCTCGATAGAGAAGTGATCTTAGGCTCCTCCAGCTTCCTTGATCCCCAA 1920
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 2127 CTTACGGAGAAGCTCGACAGAGAAGTGATCTTAGGCTCCTCCAGCTTCCTTGATCCCCTA 2186
Query 1921 ACTTTCCTAACTAAAATGAAACAACTAAACGAAGAAGAGGAGATCTCACTTGATGATATT 1980
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2187 ACTTTCCTCACTAAAATGAAACAACTAAACGAAGAAGAGGAGATCTCACTTGATGATATT 2246
Query 1981 GTCTTTTGA 1989
||| |||||
Sbjct 2247 GTCATTTGA 2255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98543669835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5