BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327342
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12140.1 | Symbols: | RING/U-box superfamily protein | chr4... 734 0.0
AT4G12150.1 | Symbols: | RING/U-box superfamily protein | chr4... 521 2e-147
> AT4G12140.1 | Symbols: | RING/U-box superfamily protein | chr4:7266546-7267154
REVERSE LENGTH=609
Length=609
Score = 734 bits (397), Expect = 0.0
Identities = 546/617 (88%), Gaps = 13/617 (2%)
Strand=Plus/Plus
Query 1 ATGAATGATCCAATTCCCAAACCCGTAGTGGA-AGTTCAGGTTCAAGCTGAGAGACAAGA 59
||||||||||| |||||||||||| |||| || |||||||| |||||| | || |||
Sbjct 1 ATGAATGATCCCATTCCCAAACCCATAGT-GAGCGTTCAGGTCCAAGCT--GTGA-AAGT 56
Query 60 ATATACAAACTCAATCCTGCTCATCATCAATACCATAAAGGATGAGATCCTTGTAAACCC 119
| ||||||||| ||| | |||||| |||||||||| ||||||||||||||| |||||||
Sbjct 57 CTCTACAAACTCGATCTTCCTCATCGTCAATACCATTAAGGATGAGATCCTTATAAACCC 116
Query 120 TGCCGCTGGCCATCGAACCGTAAA-GTCCACTCCGCTTTCCTATAATTCACTTCGCATCA 178
|| | ||||||||||| ||| ||| ||||||||||||||||||||| ||||||| |||||
Sbjct 117 TGTCACTGGCCATCGAGCCG-AAACGTCCACTCCGCTTTCCTATAAATCACTTCCCATCA 175
Query 179 ATTTCAGTGTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCTACGATCGACTCC 238
|||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 176 ATTTCAGTCTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCCACGATCAACTCC 235
Query 239 ATAGCGACGACCATTGGTTGTGCGAAT-ACTTAGTCCCAAAGATCTCAACGGCTGCAATC 297
||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 236 ATAGCGACGACAATTGGTTGTGCG-ATCACTTAGTCCCAAAGATCTCAACGGCTGCAATC 294
Query 298 AACTCAGGTTTTGGGTACAACGGCGTTGAATTGAACG-TGAGCGTCACAGTTACTTACCA 356
||| |||||||| | |||||||||||||||||| || || |||||||||||||||||||
Sbjct 295 AACGCAGGTTTTATGAACAACGGCGTTGAATTGACCGTTG-GCGTCACAGTTACTTACCA 353
Query 357 GTACGAACGTGTGGACGAGGCCTCATTAAAGGTATCGAGGATGGTTTTACTAGGGAGGAT 416
||| | | ||| || ||| | |||| ||||| ||||||||||||| ||||||||| ||
Sbjct 354 GTATGTCCATGTCGAGGAGACATCATCAAAGGAATCGAGGATGGTTCGACTAGGGAGCAT 413
Query 417 AAAAGCAGAGGAGTTGAAGAGTGTGAACATGGAAACAGAGTCGTGTTCAATTTGTCTACA 476
||||||||||| ||||||||| | |||||||||||||| |||||||| || ||||||||
Sbjct 414 GAAAGCAGAGGAATTGAAGAGTTTTAACATGGAAACAGATTCGTGTTCCATCTGTCTACA 473
Query 477 GAGTCTTTTCTCCAGTTCGAAAACATCACCCACTCGCATGAGTTGTTCCCATGTCTTCCA 536
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 474 GAGTCTAGTCTCCAGTTCGAAAACAGGACCCACTCGCATGAGTTGTTCCCATGTCTTCCA 533
Query 537 TAAG-GGCTGTCTCGTGGAGTGGCTCTACCGCAAAAACACTTGCCCGATGTGTCGGACTG 595
| || |||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 534 T-AGTAGCTGTCTCGTGGAGTGGCTCAAGAGAAAAAACACTTGCCCGATGTGTCGGACTG 592
Query 596 TGCTCTACGATCAATGA 612
|||||||||||| ||||
Sbjct 593 TGCTCTACGATCGATGA 609
> AT4G12150.1 | Symbols: | RING/U-box superfamily protein | chr4:7268837-7270267
REVERSE LENGTH=1074
Length=1074
Score = 521 bits (282), Expect = 2e-147
Identities = 455/535 (85%), Gaps = 25/535 (5%)
Strand=Plus/Plus
Query 54 ACAA-GAATATACAAACTCAATCCTGCTCATCATCAATACCATAAAGGATGAGATCCTTG 112
|||| ||| |||||||||| ||| | |||||| |||||||||| |||||||||||||||
Sbjct 72 ACAAGGAA-ATACAAACTCGATCTTCCTCATCGTCAATACCATTAAGGATGAGATCCTTA 130
Query 113 TAAACCCTGCCGCTGGCCATCGAACCGTAAAGTCCACTCCGCTTTCCTATAATTCACTTC 172
||||||||| | ||||||||||||||| || ||||||||||||||||||||| |||||||
Sbjct 131 TAAACCCTGGCACTGGCCATCGAACCGCAACGTCCACTCCGCTTTCCTATAAATCACTTC 190
Query 173 GCATCAATTTCAGTGTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCTACGATC 232
|||||||| || | |||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 191 CCATCAATTACACTCTCCCTAGTTGTAGTCACCACCACATCCAATCGTTACTCCATGATC 250
Query 233 GACTCCATAGCGACGACCATTGGTTGTGCGAAT-ACTTAGTCCCAAAGATCTCAACGGCT 291
|||||||||| |||||||||||||||||||| | ||||||||||||||||||||| | |
Sbjct 251 GACTCCATAGAGACGACCATTGGTTGTGCGA-TCACTTAGTCCCAAAGATCTCAA-G--T 306
Query 292 GCAATCAACTCAGGTTTTGGGTACAACGGCGTTGAATTGAACGTGAGCGTCACAGTTACT 351
|| |||| ||||||||||| | | || |||| |||||||||| | ||||||
Sbjct 307 GCTATCAGCTCAGGTTTTG--T---------T-GACTTGACCGTGAGCGTCGCGGTTACT 354
Query 352 TACCAGTACGAACGTGTGGACGAGGCCTCATTAAAGGTATCGAGGATGGTTTTACTAGGG 411
||| |||||| ||||| |||||||| |||||||| |||||||||||||| ||| ||||
Sbjct 355 TACAAGTACGTCCGTGTCGACGAGGCAGCATTAAAGATATCGAGGATGGTTCTACAAGGG 414
Query 412 AGGATAAAAGCAGAGGAGTTGAAGAGTGTGAACATGGAAACAGAGTCGTGTTCAATTTGT 471
|| | | |||||| |||||| ||||| | ||||||||||||| ||||||
Sbjct 415 TTCATGAGCGTAGAGGAAACAAAGAGTTTGAAC--G----CAGAGTCGTGTTCCATTTGT 468
Query 472 CTACAGAGTCTTTTCTCCAGTTCGAAAACATCACCCACTCGCATGAGTTGTTCCCATGTC 531
|| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 469 CTCCAGAGTCTAGTCTCCAGTTCGAAAACAGCACCCACTCGCATGAGTTGTTCCCATGTC 528
Query 532 TTCCATAAGGGCTGTCTCGTGGAGTGGCTCTACCGCAAAAACACTTGCCCGATGT 586
||||| || || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 529 TTCCACAATGGTTGTCTCGTGGAGTGGCTAAACCGCAAAAACACTTGCCCGATGT 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5