BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327351
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12350.1 | Symbols: MYB42, AtMYB42 | myb domain protein 42 |... 1214 0.0
> AT4G12350.1 | Symbols: MYB42, AtMYB42 | myb domain protein 42
| chr4:7324912-7326636 FORWARD LENGTH=861
Length=861
Score = 1214 bits (657), Expect = 0.0
Identities = 805/874 (92%), Gaps = 20/874 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAGGCAGCCTTGTTGTGACAAGCTCCTGGTGAAGAAGGGGCCGTGGACGGCGGAA 60
||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGGCAGCCATGTTGTGACAAGCTCATGGTGAAGAAGGGGCCGTGGACGGCGGAG 60
Query 61 GAAGACAAGAAACTGATAAACTTTATATTGAGCAACGGCCATTGTTGCTGGAGGGCTTTG 120
|||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||
Sbjct 61 GAAGACAAGAAACTGATAAACTTTATCTTGACCAACGGCCACTGTTGCTGGAGGGCTTTG 120
Query 121 CCGAAGTTGGCCGGTCTCCGTCGCTGCGGGAAGAGCTGCCGTCTACGGTGGACCAATTAT 180
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 CCGAAGCTGGCCGGTCTCCGTCGCTGTGGGAAGAGCTGCCGTCTACGGTGGACCAATTAT 180
Query 181 CTCCGACCTGACTTGAAAAGAGGTCTTCTCTCCGATGCCGAGGAACAGCTTGTCATCGAC 240
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 CTCCGACCTGACTTGAAGAGAGGTCTTCTCTCCGACGCCGAGGAACAGCTTGTCATCGAC 240
Query 241 CTTCATGCTCTTCTCGGAAACAGATGGTCCAAGATCGCTGCAAGATTACCAGGAAGAACT 300
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCATGCTCTTCTCGGCAACAGATGGTCCAAGATCGCTGCAAGATTACCAGGAAGAACA 300
Query 301 GACAACGAAATAAAAAATCATTGGAATACTCATATCAAGAAGAAGCTCCTTAAGATGGAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GACAACGAAATAAAAAATCATTGGAATACTCATATCAAGAAGAAGCTCCTTAAGATGGAA 360
Query 361 ATCGATCCTTCAACCCATCAACCTTTAAACAAAGTATCTACCGACAAAAAGTTTGTCGAT 420
||||||||||| ||||||||||||||||||||||||| |||||| | ||| || ||||||
Sbjct 361 ATCGATCCTTCGACCCATCAACCTTTAAACAAAGTATTTACCGATACAAACTTAGTCGAT 420
Query 421 AGAT-T-AA-CTTCATCGAAAGCCGGA-AATGTAAAGAGAAGTGATAGTAAAAGCAAAGA 476
| || | || ||||||||||||||| | |||||||| || | | | ||||| | |||
Sbjct 421 AAATCTGAAACTTCATCGAAAGCCG-ACAATGTAAAT-GA--T-A-A-TAAAATCGTAGA 473
Query 477 GATCGATGGGACAACGACAAATACAATAGATGAAACTAGCACGATCACTCATAAAAATAG 536
||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 474 GATCGATGGGACAACGACAAATACAATAGATGA---TAGCATTATCACTCATCAAAATAG 530
Query 537 TTCAAAAGATGATTATGAATTACTTGGTGATATTATTCATAACTATGAAGATTTATTTAA 596
|||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||
Sbjct 531 TTCAAATGATGATTATGAATTACTTGGTGATATAATTCATAATTATGGAGATTTATTTAA 590
Query 597 TATTCTATGGACCAACGATGAACCTCCTCTAGTCGATGATGCATCATGGAGTAATAATAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 591 TATTCTATGGACCAACGATGAACCTCCTCTAGTCGATGATGCATCATGGAGCAATCATAA 650
Query 657 CGTCGGTATTGGTGGAACAGCTGCAGTCT-CAGCCTCAGACAAGAACAACATTGCTGCCG 715
||| |||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 651 CGTTGGTATTGGAGGAACAGCTGCAGT-TGCAGCCTCAGACAAGAACAACACTGCTGCCG 709
Query 716 -GTGAAGACTTCCCGGCACAG-TCATTAGAAGAACAGAACGGCGAAAGTTGGATGTTTTT 773
| ||||| ||||||| | || ||||| ||| ||||||||||||||||||||||||| ||
Sbjct 710 AG-GAAGATTTCCCGGAA-AGATCATTTGAAAAACAGAACGGCGAAAGTTGGATGTTCTT 767
Query 774 GAATTATTGCCAAGACTTTTGTGTTCAAGATTTTGGGCTCGAGTGTTACAATGGTTTTGG 833
| ||||||||||||| ||| ||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 768 GGATTATTGCCAAGAATTTGGTGTTGAAGATTTTGGGTTCGAGTGTTACCATGGTTTTGG 827
Query 834 TCAAAGCTCCATGGAGACAGGTCACAAGGACTAG 867
||||||||||||| |||| |||||||||||||||
Sbjct 828 TCAAAGCTCCATGAAGACGGGTCACAAGGACTAG 861
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5