BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327370
Length=1860
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12610.2 | Symbols: RAP74, ATRAP74 | transcription activator... 2632 0.0
> AT4G12610.2 | Symbols: RAP74, ATRAP74 | transcription activators;DNA
binding;RNA polymerase II transcription factors;catalytics;transcription
initiation factors | chr4:7454739-7458318
FORWARD LENGTH=2055
Length=2055
Score = 2632 bits (1425), Expect = 0.0
Identities = 1564/1631 (96%), Gaps = 9/1631 (1%)
Strand=Plus/Plus
Query 1 ATGTCGAACTGTTTGCAATTGAA-ACCGGCTTGTATGGGATGTGGATCACAATCCGATTT 59
||||||||||||||||||||||| | || ||||| | || || |||||||||||||||||
Sbjct 106 ATGTCGAACTGTTTGCAATTGAATA-CGTCTTGTGTTGGTTGCGGATCACAATCCGATTT 164
Query 60 GTATGGAAGCTCTTGTAGACACATGACGTTGTGTTTGAAGTGTGGTAGAACCATGGCTG- 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 165 ATATGGAAGCTCTTGTAGACACATGACGTTGTGTTTGAAGTGTGGTAGAACCATGGC-GC 223
Query 119 AGAATAAAGCTAAGTGTCTCGATTGTGGAACCGTCCTTACGCGTTTGATTCGGGAGTATA 178
|||||||| ||||||||| ||| |||||||||||| |||| |||||||||||||||||||
Sbjct 224 AGAATAAATCTAAGTGTCACGAGTGTGGAACCGTCGTTACACGTTTGATTCGGGAGTATA 283
Query 179 ACGTTCGTGCTGCGGCACCGACGGATAAGAACTACTTCATTGGTAGATTTGTGACTGGTC 238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 284 ACGTTCGTGCTGCGGCACCTACGGATAAGAACTACTTCATTGGTAGATTTGTGACTGGTC 343
Query 239 TTCCAAATTTCAAGAAAGGTTCTGAGAATAAATGGTCTCTTCGTAAAGATATACCGCAAG 298
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 TTCCTAATTTCAAGAAAGGTTCTGAGAATAAATGGTCTCTTCGTAAAGATATACCGCAAG 403
Query 299 GTCGTCAGTTTACCGATGCACAACGGGAGAAGTTAAAGAACAAACCTTGGATCTTGGAAG 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 GTCGTCAGTTTACAGATGCACAACGGGAGAAGTTAAAGAACAAACCTTGGATCTTGGAAG 463
Query 359 ATGAAACTGGACAGTTTCAGTACCAGGGACATCTTGAAGGCTCTCAGTCTGCTACTTACT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 ATGAAACTGGACAGTTTCAGTACCAGGGACATCTTGAAGGCTCTCAGTCTGCTACTTACT 523
Query 419 ATCTCTTAGTGATGCAGAACAAAGAGTTTGTCGCGATTCCTGCTGGTTCTTGGTATAACT 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 524 ATCTCTTAGTGATGCAGAACAAAGAGTTTGTTGCGATTCCTGCTGGTTCTTGGTATAACT 583
Query 479 TTAACAAGGTTGCACAGTATAAGCAACTTACATTGGAAGAAGCAGAAGAGAAGATGAAGA 538
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 584 TCAACAAGGTTGCACAGTATAAGCAACTTACATTGGAAGAAGCGGAAGAGAAGATGAAGA 643
Query 539 ATCGGAGAAAAACTGCTGATGGTTATCAAAGGTGGATGATGAAAGCTGCGAATAATGGTC 598
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 ATCGGAGAAAAACGGCTGATGGTTATCAAAGGTGGATGATGAAAGCTGCGAATAATGGTC 703
Query 599 CAGCGTTGTTTGGAGAAGTGGATAATGACAAAG-AGAGTGGTGGAAGCAGCGGAGGTGGT 657
|||||||||||||||||||||||||||| |||| |||| ||||||| ||| |||||||||
Sbjct 704 CAGCGTTGTTTGGAGAAGTGGATAATGA-AAAGGAGAGCGGTGGAACCAGTGGAGGTGGT 762
Query 658 GGTAGGGGTCGTAAAAAGTCATCAGGTGGTGATGAAGATGAAGGAAATGTCTCTGACAGA 717
|||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 763 GGTAGGGGTCGTAAGAAGTCATCAGGCGGTGATGAAGAGGAAGGAAATGTTTCTGACAGA 822
Query 718 GGGGAGGAAGATGAAGAGGAAGAGGCATCTCGGAAAAGTAGACTTGGACTTAATAAAAAG 777
||||| |||||||||||||||||||| || ||||||||||||||||||||||||| ||||
Sbjct 823 GGGGATGAAGATGAAGAGGAAGAGGCGTCACGGAAAAGTAGACTTGGACTTAATAGAAAG 882
Query 778 AGTAATGATGATGATGA--A-GAAGGTCCAAGGGGTGGTGATCTTGACATGGATGATGAT 834
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 883 AGTAATGATGATGATGATGAAGAAGGTCCAAGGGGTGGTGATCTTGACATGGATGATGAT 942
Query 835 GACATTGAGAAGGGGGATGACTGGGAGCATGAGGAAATTTTCACCGATGATGACGAAGCA 894
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 943 GACATTGAGAAGGGGGATGACTGGGAGCACGAGGAAATTTTCACGGATGATGATGAAGCA 1002
Query 895 GTCGGTAATGATCCTGAGGAACGTGAAGATCTTCTGGCTCCTGAAATTCCTGCTCCTCCA 954
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1003 GTCGGTAATGATCCTGAGGAACGTGAAGACCTTCTGGCTCCTGAAATTCCTGCTCCTCCA 1062
Query 955 GAAATAAAGCAGGATGAAGATGATGAAGAAAATGAAGAAGAGGAGGGAGGGTTGAGCAAA 1014
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1063 GAAATAAAGCAGGATGAGGATGATGAAGAAAATGAAGAAGAGGAGGGAGGTTTGAGCAAA 1122
Query 1015 TCTGGTAAAGAGTTAAAGAAACTGCTTGGTAAGGCTAATGGTTTGAATGAATCTGACGAA 1074
|||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||
Sbjct 1123 TCTGGTAAAGAGTTGAAGAAACTGCTTGGTAAGGCTAATGGTTTGGACGAATCTGATGAA 1182
Query 1075 GACGATGATGACGATTCTGATGATGAGGAGGAGACAAACTTTGGTCCAGTTACGAATTCA 1134
||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 1183 GACGATGATGATGATTCTGATGATGAGGAGGAGACAAACTACGGTACAGTTACGAACTCA 1242
Query 1135 AAACAGAAGGAGGTGGCGAAAGAAGAACCTGTTGAAAATGCACCTGCAAAACCTACACCA 1194
||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1243 AAACAGAAGGAGGCGGCGAAAGAAGAACCTGTTGATAATGCACCTGCAAAACCTGCACCA 1302
Query 1195 TCTGGACCTTCTCGTGGAACACCTCCTGCAAAACCATCTAAGGGAAAGAGAAAACTAAAC 1254
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1303 TCTGGACCTCCTCGTGGAACACCTCCTGCAAAACCATCCAAGGGAAAGAGAAAACTAAAC 1362
Query 1255 GATGGCGATTCTAAAAAGCCTAGCAGCTCTGTTCAAAAGAAAGTGAAGACTGAAAATGAT 1314
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 GACGGCGATTCTAAAAAGCCTAGCAGCTCTGTTCAAAAGAAAGTGAAGACTGAAAATGAT 1422
Query 1315 CCAAAATCTTCGGTAAAAGAAGAGAGAGCAAACACAGTTTCCAAATCCAACACACCAACA 1374
|| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 CCGAAATCTTCTTTGAAAGAAGAGAGAGCAAACACAGTTTCCAAATCCAACACACCAACA 1482
Query 1375 AAAGCTGTGAAAGCTGAACCAGCTTCAGCTCCTGCATCATCATCCTCAGCTGCAACTGGG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1483 AAAGCTGTGAAAGCTGAACCAGCTTCAGCTCCTGCATCATCATCCTCAGCTGCGACTGGG 1542
Query 1435 CCTGTGACTGAAGACGAAATCCGCGCTGTTCTGATGGAGAAGAAGCAAGTCACTACACAG 1494
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1543 CCTGTGACTGAAGATGAAATCCGCGCTGTTCTGATGGAAAAGAAGCAAGTCACTACACAG 1602
Query 1495 GACCTTGTTTCCAGGTTTAAGGCAAGACTTAAGACCAAAGAGGACAAGAATGCCTTTGCC 1554
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 GATCTTGTTTCCAGGTTTAAGGCAAGACTTAAGACCAAAGAGGACAAGAATGCCTTTGCC 1662
Query 1555 AATATTCTGAGGAAGATCTCAAAGATACAGAAGAACGCTGGTTCTCAAAACTTCGTCGTT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 AATATTCTGAGGAAGATCTCAAAGATACAGAAGAACGCTGGTTCTCAAAACTTCGTCGTT 1722
Query 1615 TTGAGAGAAAA 1625
|||||||||||
Sbjct 1723 TTGAGAGAAAA 1733
Score = 276 bits (149), Expect = 6e-73
Identities = 202/227 (89%), Gaps = 5/227 (2%)
Strand=Plus/Plus
Query 1632 ATCCTGTTCTAACCGTCAACCACGCAAGATGGAACATGTGACTGAAGACGAACTCCGCAG 1691
|||| | ||||| | |||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1783 ATCC-GATCTAATCTTCAACCACGCAAGATGGAACTTGTGACTGAAGACGAAATCCGCAA 1841
Query 1692 TGTTTTAATGGAGACA-AAACAATTAACTACACTGGAACTTGTTATGAGGTTTAAGGAAA 1750
||| | ||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 AGTTCTGATGGAGA-AGAAGCAATTAACTACACTGGAACTTGTTATGAGGTTTAAGGAAA 1900
Query 1751 GACTTACAACCAGAGAGGAAAAGGATACATTTGCCCATATTCTCAAGAAGATCGCAAAGT 1810
|||||||||||| |||||| |||||| | ||| |||||||||||||||||||||||||||
Sbjct 1901 GACTTACAACCACAGAGGACAAGGATTCCTTTTCCCATATTCTCAAGAAGATCGCAAAGT 1960
Query 1811 TACAGAAAAACGCTGGTTCTCTAAAGTATT-TTCTTGTTTTGAGAGA 1856
||||||| ||| |||||||| ||||| || || |||||||||||||
Sbjct 1961 TACAGAAGAACCCTGGTTCTGAAAAGT-TTGTTGTTGTTTTGAGAGA 2006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92067799530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5