BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg327388
Length=693
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04260.1 | Symbols: | Bromo-adjacent homology (BAH) domain-... 728 0.0
AT4G22140.1 | Symbols: EBS | PHD finger family protein / bromo-... 617 3e-176
> AT4G04260.1 | Symbols: | Bromo-adjacent homology (BAH) domain-containing
protein | chr4:2054636-2055849 FORWARD LENGTH=582
Length=582
Score = 728 bits (394), Expect = 0.0
Identities = 494/541 (91%), Gaps = 11/541 (2%)
Strand=Plus/Plus
Query 130 ATGCGTCCATCGGATGCTGGTAAGGCTCCTTACGTGGCGCGTGTTGAGAAGATTGAAGCA 189
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCGTCCATCAGATGCTGGTAAAGCTCCTTACGTGGCGCGTGTTGAGAAGATTGAAGCA 60
Query 190 GATGCAAGGAACAATGTGAAGGTGCATTGTCGATGGTATTACCGTCCTGAAGAATCACTT 249
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct 61 GATGCAAGGAACAATGTGAAGGTGCATTGTCGATGGTACTATTGTCCTGAAGAATCACAT 120
Query 250 GGGGGAAGGAGACAGTTCCATGGAGCTAAAGAGCTCTTCTTGTCTGATCACTACGATGTT 309
||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 121 GGGGGAAGGAGACAGCTCCATGGAGCTAAAGAGCTTTTCTTGTCTGATCACTTCGATGTT 180
Query 310 CAAAGTGCACACACTATTGAAGGGAAATGTATCGTTCATACCTTTAAAAACTACACAAGG 369
|||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 181 CAAAGTGCACACACCATTGAAGGAAAATGTATAGTTCACACCTTTAAAAACTACACGAGG 240
Query 370 CTTGAAAATGTTGGAGTGGAAGATTATTATTGTAGATTCGAGTATAAGGCTGCTACTGGC 429
||||||||||||||||||||||||||||| |||| ||| || ||||| ||||||||||||
Sbjct 241 CTTGAAAATGTTGGAGTGGAAGATTATTACTGTATATTTGACTATAAAGCTGCTACTGGC 300
Query 430 GCGTTTACTCCCGATCGAGTTGCTGTGTACTGCAAATGTGAAATGCCGTATAACCCAGAT 489
||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 301 GCGTTTACTCCTGATCGAGTTGCTGTGTACTACAAATGTGAAATGCCGTATAACTCAGAT 360
Query 490 GATCTGATGGTGCAA-TG-TGAAGGC-TGCA-AGGACTGGTATCACCCAGCGTGTGTAGG 545
|| ||||||| | | | | | | | | | ||| | | ||||| ||||||||||||
Sbjct 361 GAACTGATGGAGTTACTACT-ATGTCATT-ATAGG---G-T-TCACCTAGCGTGTGTAGG 413
Query 546 CATGACGATTGAAGAAGCCAAGAAGCTGGAACACTTTGTATGTGTTGAATGCAGCTCTGA 605
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CGTGACGATTGAAGAAGCCAAGAAGCTGGAACACTTTGTATGTGTTGAATGCAGCTCTGA 473
Query 606 CGAAGATGGAGTCAAAAGATCTCAGAACGGATTTGCTTCATCGCCAACCAATGATCTTAA 665
|||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||
Sbjct 474 CGAAGATGGAGTCAAAAGATTTCAGAACGGGTTTGCTTCATCAACAACCAATGATCTTAA 533
Query 666 G 666
|
Sbjct 534 G 534
> AT4G22140.1 | Symbols: EBS | PHD finger family protein / bromo-adjacent
homology (BAH) domain-containing protein | chr4:11728525-11730509
REVERSE LENGTH=1015
Length=1015
Score = 617 bits (334), Expect = 3e-176
Identities = 484/557 (87%), Gaps = 7/557 (1%)
Strand=Plus/Plus
Query 114 GGGTGATTGTGTGTTAATGCGTCCATCGGATGCTGGTAAGGCTCCTTACGTGGCGCGTGT 173
||| ||||||||||| ||||| ||||| ||||||||||| | || || ||||| |||||
Sbjct 378 GGGAGATTGTGTGTTGATGCGCCCATCAGATGCTGGTAAACCACCATATGTGGCCCGTGT 437
Query 174 TGAGAAGATTGAAGCAGATGCAAGGAACAATGTGAAGGTGCATTGTCGATGGTATTACCG 233
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 438 TGAGAAGATTGAAGCTGATGCGAGGAACAATGTGAAGGTGCACTGTCGATGGTATTACCG 497
Query 234 TCCTGAAGAATCACTTGGGGGAAGGAGACAGTTCCATGGAGCTAAAGAGCTCTTCTTGTC 293
||||| || |||||||| || |||||||| || |||||||| |||||||| ||||||||
Sbjct 498 CCCTGAGGAGTCACTTGGTGGTAGGAGACAATTTCATGGAGCCAAAGAGCTTTTCTTGTC 557
Query 294 TGATCACTACGATGTTCAAAGTGCACACACTATTGAAGGG-AAATGTATCGTTCATACCT 352
||| || | |||||||||||||||||||| |||| |||| ||||| || ||||| ||||
Sbjct 558 TGACCATTTTGATGTTCAAAGTGCACACACCATTG-AGGGAAAATGCATTGTTCACACCT 616
Query 353 TTAAAAACTACACAAGGCTTGAAAATGTTGGAGTGGAAGATTATTATTGTAGATTCGAGT 412
| ||||||||||| ||||||||||| ||||| | || ||||||||||||||||||||||
Sbjct 617 TCAAAAACTACACGAGGCTTGAAAACGTTGGGGCAGAGGATTATTATTGTAGATTCGAGT 676
Query 413 ATAAGGCTGCTACTGGCGCGTTTACTCCC-GATCGAGTTGCTGTGTACTGCAAATGTGAA 471
| ||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct 677 ACAAGGCTGCTACTGGCGCATTTAC-CCCTGATCGAGTTGCTGTGTACTGCAAATGTGAA 735
Query 472 ATGCCGTATAACCCAGATGATCTGATGGTGCAATGTGAAGGCTGCAAGGACTGGTATCAC 531
||||| || || ||||| ||||| |||||||| |||||||||||||| |||||||||||
Sbjct 736 ATGCCTTACAATCCAGACGATCTCATGGTGCAGTGTGAAGGCTGCAAAGACTGGTATCAT 795
Query 532 CCAGCGTGTGTAGGCATGACGATTGAAGAAGCCAAGAAGCTGGAACACTTTGTATGTGTT 591
|| |||||||| |||||||||||||||||||| |||||||| || ||||||||||||| |
Sbjct 796 CCTGCGTGTGTTGGCATGACGATTGAAGAAGCAAAGAAGCTTGATCACTTTGTATGTGCT 855
Query 592 GAATGCAGCTCTGACGAAGATGGAGTCAAAAGATCTCAGAACGGATTTGCTTCATCGCCA 651
|||||||| ||||| || |||| |||||| ||| ||||| || ||| ||||||| |||
Sbjct 856 GAATGCAGTTCTGATGACGATG---TCAAAAAATCGCAGAATGGGTTTACTTCATCTCCA 912
Query 652 ACCAATGATCTTAAGGT 668
| ||||| |||||||
Sbjct 913 GCTGATGATGTTAAGGT 929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33556410196
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5